| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_5171 |
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| Symbol | |
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| ID | 5319473 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009621 |
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| Strand | - |
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| Start bp | 124772 |
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| End bp | 125623 |
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| Gene Length | 852 bp |
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| Protein Length | 283 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640776949 |
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| Product | aminotransferase class IV |
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| Protein accession | YP_001313881 |
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| Protein GI | 150377286 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0115] Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase |
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| TIGRFAM ID | [TIGR01121] D-amino acid aminotransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.623088 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.871234 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGGCAGGA TCGTCTACGT CCATGGTCAA TTCATACCCG AGGAGGAAGC CCGGATCGGG
CTTTTTGACC GGGGTTTTCT GTTCGGCGAT GCCGTCTACG AGGTAACGGC GGTGATCGGC
GGGCGGATGA TCGATAACGA TCTGCATCTC GGTCGGCTCT GCCGTTCGCT GAAGGAGCTC
GCCATCCCGC TCGCGCTCTC CCTGGAGCAA ATTGCAGGCA TTCAAGCGGA ACTGATCGCC
CGCAACGACT TGCGGGACGG CACGGTCTAT CTGCAGGTCT CGCGCGGCGA GGCGGATCGC
GACTTTCTCT ATTCCGAGGC ACTGGCGCCG AAGCTTGTCG GCTTCACCCA GGCGAAGATG
CTGAGCGGCA CGAGGGCCCA GCGGGACGGC ATCGCGGTCG ATCTGGCGGA CGATCCGCGC
TGGAAACGGC GTGACATCAA AACCGCCATG CTTCTCGGCC AGGTCATGGC CAAACAAGCG
GCACGCGCCC GCGGTTTTGA CGATGTCTGG CTGGTGGAGA ACGGGCTGGT GACCGAGGGC
GCCAGCTCCA CGGCCCATGT CATAACGGCC GAGGGGCACA TCCTCACGCG CGCCGCTTCG
CATGTGACGC TGCCGGGCTG TACGCAGCGT GCTCTTGCCA AGCTCTGCGC GGCCGAGGGG
CTACAAATCG TGGAGCGTGC CTTCGCGCCC GGCGAGGCGC AGGCTGCCGC GGAGGCGTTT
CAGACCTCCG CGTCCAGCCT GGTGACCCCG GTCGTGCGGA TCGGCGTGCG GCTTGTCGGC
AACGGCAGGC CCGGACCGAT GACCCGGAAA CTCCAGGCTC TATATCTGGA AGCGGCCGGC
ATTGCGCACT AA
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| Protein sequence | MGRIVYVHGQ FIPEEEARIG LFDRGFLFGD AVYEVTAVIG GRMIDNDLHL GRLCRSLKEL
AIPLALSLEQ IAGIQAELIA RNDLRDGTVY LQVSRGEADR DFLYSEALAP KLVGFTQAKM
LSGTRAQRDG IAVDLADDPR WKRRDIKTAM LLGQVMAKQA ARARGFDDVW LVENGLVTEG
ASSTAHVITA EGHILTRAAS HVTLPGCTQR ALAKLCAAEG LQIVERAFAP GEAQAAAEAF
QTSASSLVTP VVRIGVRLVG NGRPGPMTRK LQALYLEAAG IAH
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