| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_5112 |
|---|
| Symbol | |
|---|
| ID | 5319414 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009621 |
|---|
| Strand | + |
|---|
| Start bp | 60085 |
|---|
| End bp | 62505 |
|---|
| Gene Length | 2421 bp |
|---|
| Protein Length | 806 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640776890 |
|---|
| Product | FAD dependent oxidoreductase |
|---|
| Protein accession | YP_001313822 |
|---|
| Protein GI | 150377227 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0404] Glycine cleavage system T protein (aminomethyltransferase)
[COG0665] Glycine/D-amino acid oxidases (deaminating) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.0323529 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCTCCC ACGCTCAAGC GGTCGTTATC GGCGGCGGTC TCATCGGCTG TTCCATTCTT
TACCATCTCA CCAAGCTCGG CTGGTCCGAT GTCGTGCTTC TCGAGCGGAG CGAACTGACG
TCCGGGTCGA CCTGGCATGC GGCGGCCAAT ATCCATGGAC TGCACGATTC CACCAATATC
AGCCTGCTTC AGCATTATAC GATGGCGCTA TACAAGGAAC TGGAGGTAGA GACCGGGCAA
GGCTGCGGCA TCTTCCAGCC GGGTTCGCTT TACCTTGCGC AGAGCGAGGC GCGCGAGCAC
CAGCTTCGCC TCCAGGAAGC CAAGGCCCGC CGCTACAGCA TGAATTTCTT CGAGATCGGG
CGCGACGAGG CGGAGCGCCT GCATCCGCTT GTCGATTTCG AAGGCATCCG CTGTATCATG
TACGAGCCGG AGGGCGGCAA TGTCGACCCG TCCGGCGTGA CGATGGCCTA TGCCGCTGGC
GCACGCCGGC GCGGCGCCGA AATCCACCGC TTCACGCCGG TCACCGGCAC GGAGGCGCAA
GCGGACGGCA GCTGGATTGT ACGCACGCCG AAGGGCGACA TCCGCACGCA ATGGGTCGTC
AATGCCGCCG GGTTGTGGGG CCGGGAGGTT GCCGCCATGG CAGGGATCGA ACTTCCGCTG
ATGCCGACGG AGCACCAGTA TTTCGTGACC GAGACCATAG CCGAGGTCGC CGCGCTCGAC
CGCCGGCTTC CCTCGATCGC CGACCGCGAC GGCGAGTATT ACCTCCGGCA GGAAGGGCTG
GGTCTGCTGA TCGGCGCCTA TGAGCGCGAC ATGCGCTTCT GGGCCGAGGA CGGCACGCCA
TCAAGCTTCG GCCACGAACT CTTCCCGGAC GACCTCGAAC GCATCGAGGA AAACATGATG
CGCGCGATCG ACCGCGTGCC GGTCGTCGGA ACCGCAGGCA TCAAGCGGGT GATAAACGGA
CCGATGATCT GGTCGCCCGA CAGCGCCGTC CTCTTCGGCC CGGTGCCGGA ACTGACGAAT
TACTTCTGCT GCAACGGTAT CATTCCCGGC TTCTCGCAGT CGGGCGGCAT GGGCAAGCTT
GCGGCCGAGT GGATGATCGA GGGCGAACCA TCGCTCGACA TGTTCGGCTG GGACATGGCG
CGTTTCGGCC ATTGGGCCGA CAAGGCCTTC ACCAAGGCGC GCGTGCAGGA CCAGTACAGC
CATCGCTTCA AAATCCACTT TCCCAATGAG GAGCGCGCCG CCGGCCGCCC CGTCCGCACC
CGTCCGGCCT ACGAGAAACA GAAGGCGATG GGCGCCGTGT TCGGCCTGAA TTTCGGCTGG
GAGCATCCGC TCTGGTTTTC CGCCGATGGC GATCCGAAGG AAGAGACGAT CGGCTTCACT
CGCCAGAACT GGTGGGGGCC CGTCGGCCGC GAGGCGCGCA TGTTGCGCGA AAACGCCGGC
ATTATCGACA TTTCGAACTT CGCCAAATAT TCGGTGAAGG GACCGGGCGC TTCGGATTGG
TTGAATGCGG TTTTCGCCAA CCATATGCCC GGCCAGGTCG GCCGCTCTTG CCTGACGCCC
CTCATCGGCA AGCGGGGCGG CATCGCGGGT GACTTCACCG TGACGAAGCT CGGCGAGGAT
GATTTCATGA TCTTCGGCTC CGGCATGGCG GAGCGCTATC ATCAGCGCTT CTTCAATGCG
GTGCCGCTTC CCGAGGGTTC AAGCTTCACG CCGATGACCG AGCGTCTTTG CGCCTTCAAC
ATTGCCGGGC CGAAATCACG TAAACTGCTG ATGCGCCTTA CGAATGAGGA CCTTTCCAAC
GAAAGCTTCC CCTTCATGCG GTCGCGCAGG ATGCGAGTCG CTGATATCGA TGTCATCGCA
TTACGCGTCT CCTTCACGGG CGATCTCGGT TGGGAGCTCT ATTGCGACGC GGACCGGCAG
GTCGCGCTCT ATGAGGCGCT GCTGGAGGTC GGCAGGGACC TCAGCGCCGG GCCGGTCGGC
TCACGCGCGC TCGCCTCGCT TCGAATCGAA AAAGGCTATG GCAGCTGGAG CCGCGAATAC
TCGCCGGAAT ATTGGCCGCA GGAATGCGCG CTCGACCGGC TGATCAAACT CGAAAAGAGA
GCGTTCCTGA ACAAAGCATC TTATGAGAAA ATTGCCGCGG AGCGCCCGAG GCAGAAGCTC
GCCATCGTAT CGATCGATGT CCACGATGCA GACGCCACCG GCGGCGAGCC GATCTTTCTC
CACGACGGCA CCCCGATCGG ACAGGTTTCA TCCGGCGCCT ACGGCTATAC AGTCGGCATG
TCGCTCGCCC TCTGCTACAT AAAGGCCGAT ATGGCACAGG CCGGCGACCG GGTGAGCGTC
GCCATTCTCG GTCGGCCCCA TAATGCTACC ATTCTGGAAC ATCCGCCCTT CGACCCGAAA
GGCGAAAGAC TTCGTATGTA G
|
|---|
| Protein sequence | MRSHAQAVVI GGGLIGCSIL YHLTKLGWSD VVLLERSELT SGSTWHAAAN IHGLHDSTNI
SLLQHYTMAL YKELEVETGQ GCGIFQPGSL YLAQSEAREH QLRLQEAKAR RYSMNFFEIG
RDEAERLHPL VDFEGIRCIM YEPEGGNVDP SGVTMAYAAG ARRRGAEIHR FTPVTGTEAQ
ADGSWIVRTP KGDIRTQWVV NAAGLWGREV AAMAGIELPL MPTEHQYFVT ETIAEVAALD
RRLPSIADRD GEYYLRQEGL GLLIGAYERD MRFWAEDGTP SSFGHELFPD DLERIEENMM
RAIDRVPVVG TAGIKRVING PMIWSPDSAV LFGPVPELTN YFCCNGIIPG FSQSGGMGKL
AAEWMIEGEP SLDMFGWDMA RFGHWADKAF TKARVQDQYS HRFKIHFPNE ERAAGRPVRT
RPAYEKQKAM GAVFGLNFGW EHPLWFSADG DPKEETIGFT RQNWWGPVGR EARMLRENAG
IIDISNFAKY SVKGPGASDW LNAVFANHMP GQVGRSCLTP LIGKRGGIAG DFTVTKLGED
DFMIFGSGMA ERYHQRFFNA VPLPEGSSFT PMTERLCAFN IAGPKSRKLL MRLTNEDLSN
ESFPFMRSRR MRVADIDVIA LRVSFTGDLG WELYCDADRQ VALYEALLEV GRDLSAGPVG
SRALASLRIE KGYGSWSREY SPEYWPQECA LDRLIKLEKR AFLNKASYEK IAAERPRQKL
AIVSIDVHDA DATGGEPIFL HDGTPIGQVS SGAYGYTVGM SLALCYIKAD MAQAGDRVSV
AILGRPHNAT ILEHPPFDPK GERLRM
|
|---|
| |