Gene Smed_5110 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_5110 
Symbol 
ID5319412 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009621 
Strand
Start bp57192 
End bp58727 
Gene Length1536 bp 
Protein Length511 aa 
Translation table11 
GC content63% 
IMG OID640776888 
Producttrimethylamine methyltransferase 
Protein accessionYP_001313820 
Protein GI150377225 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG5598] Trimethylamine:corrinoid methyltransferase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.148591 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.0268 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTGGCA GACGCGGCGG CGGGCGGCGA TCGCGGGCGA TACGGGGCGG CGACGGTATA 
TCGCAACTGC CGTGGCAGGA GGTCGTCAAC AGCTATGCCC CGATGCAGCT TCTCGACGAG
GAGCGTATCG AGGCGCTCCA TCAAAACTCG ATGCGCATTC TCTCCGAGAT CGGCATCCGC
GTCATGAGCG AAAAGGCAAT GACGCTGTTC GAAAGGGCGG GCGCGATCGT CGACCGCGAG
AACCTGATGA TCCGCATCGA TGAGTCGATC GTCGAAGCGG TACTGGCCAC GACGCCGTCA
TCCTTCACGC TGACCAGCCG CAACCCGGAA AAACGACTGA CGATCGGCGG CAATACGATT
GCCTTCGGCC TGGTGGCGGG CCCTCCGAAC GTGCACGACC GAGTCAACGG CCGGCGGCAG
GGCAATCTCG CCGATTACCG GAATTTCACC CGTCTCGCCC ACCACTTCAA CGCGATCCAC
ATTCTTGGCA ATCAGGTCTG CGCGCCGATG GAGCTGCCCG CCAACGCGCG GCACCTCGAC
ACCTACAACG CCAATATCAC GCTCAGCGAC CTCTGCTACC ACTGCACCGC CATCGGGCGC
GGGCGCGCGG TGGACGGCAT CAACATGATG GCGATCTCGC GTGGCATCAG CGTCGAGGAG
ATGCGCCATT CCCCCGGTGT CATCACGATT ATCTCGGTGA ATTCGCCGCG CCTCTTCGAC
GATGCGATGG CAGACGGGCT CATCGCCATG GCCGAGCACG GGCAGCCGGT GACCATCACG
CCCTTCACGC TGATGGGTGC CATGACGCCG GTAACCCTTG CGGCCGCACT CTGCCAGCAG
AATGCCGAGG CATTGTTCGG TGTGACGCTT GCCCAACTGG TCAATCCGGG TACACCGGTC
ATGTACGGTG CGTTCACCTC CAATGTGGAC ATGCGCTCCG GCGCTCCGGC CTTCGGCACA
CCGGAAAACG CCAAGGCCAA CATCGTTGCG GGCCAACTTG CCCGGCGCTA CAAGCTTCCC
TACCGCACAT CGAACGCCAA TGCCTCCAAT GCCGTCGATC TTCAGGCGGC CTACGAGACG
GAGATGGCGA CCTGGGGCGC TGTGCTTGGT GGCGCCAACC TCATCTATCA CGCCGCCGGG
TGGCTCGAAG GCGGGCTGAC GGCGTCTTAT GAGAAGCTCG TCCTCGACGT GGAGATCCTG
CAGAACATGA TGGGCTTCCT GGAGCCCATG CCCTTCTCCG AGGACGATCT CGGTTTCGAC
GCCATCAAAT CGGTACCGGC CGGCGGGCAC TTTTTCGGCT CCGAACACAC GATGGCTCGA
TATGAGACGG CCTTCTATCA GCCGATGCTG TCCAACTGGC AGAACTACGG CAGCTGGCAG
GAGGCCGGCG GCCACGATGC CCTGGAGCGC GCGACCGGCA TCTGGCAGCA GGCCTTGCGG
GAGTATGAGG AGCCGGTGCT CGACCCGGCT ATCCGGGAAG AGCTCGATGC CTACATGATC
AAGCGGCGCG CGGAGATCGG GGCGGGCGAA CCTTGA
 
Protein sequence
MSGRRGGGRR SRAIRGGDGI SQLPWQEVVN SYAPMQLLDE ERIEALHQNS MRILSEIGIR 
VMSEKAMTLF ERAGAIVDRE NLMIRIDESI VEAVLATTPS SFTLTSRNPE KRLTIGGNTI
AFGLVAGPPN VHDRVNGRRQ GNLADYRNFT RLAHHFNAIH ILGNQVCAPM ELPANARHLD
TYNANITLSD LCYHCTAIGR GRAVDGINMM AISRGISVEE MRHSPGVITI ISVNSPRLFD
DAMADGLIAM AEHGQPVTIT PFTLMGAMTP VTLAAALCQQ NAEALFGVTL AQLVNPGTPV
MYGAFTSNVD MRSGAPAFGT PENAKANIVA GQLARRYKLP YRTSNANASN AVDLQAAYET
EMATWGAVLG GANLIYHAAG WLEGGLTASY EKLVLDVEIL QNMMGFLEPM PFSEDDLGFD
AIKSVPAGGH FFGSEHTMAR YETAFYQPML SNWQNYGSWQ EAGGHDALER ATGIWQQALR
EYEEPVLDPA IREELDAYMI KRRAEIGAGE P