| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_5001 |
|---|
| Symbol | |
|---|
| ID | 5318650 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009620 |
|---|
| Strand | - |
|---|
| Start bp | 1517160 |
|---|
| End bp | 1517837 |
|---|
| Gene Length | 678 bp |
|---|
| Protein Length | 225 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 640776783 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001313715 |
|---|
| Protein GI | 150377119 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.0012258 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGTTG CGATGCATAA CGCACTGCTG GAATCAGAAA CACGGCAGGC GAAGCTACTT
TTCGAATTGG ATTGGCGGGT CGATGACCCG TCTACATACA TTCTAGACGA TGTAGACACG
CCGTGCGAGC GGTCGACAAA AATGCGCGCA AAATATTATC AGGAGCTGCA CGACGAAAAC
GATGCTTACC AGGTAAACAA CTGGCTTGTC GCCGAGAAGG CGTCGATCCT GAAGGCAAAA
CCAAAGACGC TGGTCGAGGT CGGTTGCGGG AACGGGGCTT TCTCTCTTTC CACCGCGGAG
GACCTGGAGA AGGTCTTCGC CGTCGACTGG GCCTTGTCTC CGAAGTTTGG CGGCCGACCT
GAGAATGTCG AATTCGTGCA GGCTGATGTA ACCCAGGATC GCTTGCCTAA AGCGGATGTT
GTTTGTTCTG CAGACGTGCT TGAGCACTTC ACGCCTTGGA ACGTCACCAG GGTTCTTGAG
AATTGCGCGA GTGCAGCGGC GCTGCAGTAT CACGTCATCG CCTGTTACGA CGACGGGCAT
AGTCATCTCA CGGTGATGAG GCCCGCTGCG TGGCTCGCCT CATTCTGGCG GTATTTCCCG
GACGCGCGCC TGACAAGGAT TGACTGCCGG CGGGAGAAGC ACACGCAACT GGTCTGCGTC
ATCACAAATA TTACATGA
|
|---|
| Protein sequence | MSVAMHNALL ESETRQAKLL FELDWRVDDP STYILDDVDT PCERSTKMRA KYYQELHDEN
DAYQVNNWLV AEKASILKAK PKTLVEVGCG NGAFSLSTAE DLEKVFAVDW ALSPKFGGRP
ENVEFVQADV TQDRLPKADV VCSADVLEHF TPWNVTRVLE NCASAAALQY HVIACYDDGH
SHLTVMRPAA WLASFWRYFP DARLTRIDCR REKHTQLVCV ITNIT
|
|---|
| |