| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_4932 |
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| Symbol | |
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| ID | 5318248 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009620 |
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| Strand | + |
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| Start bp | 1442210 |
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| End bp | 1444933 |
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| Gene Length | 2724 bp |
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| Protein Length | 907 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640776715 |
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| Product | signal transduction histidine kinase |
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| Protein accession | YP_001313647 |
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| Protein GI | 150377051 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains
[COG3920] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.752686 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCACGGCG CAGAAATTCT ACCTAAAGGT GTGTTTGACG ACGAAACAAG TTTACACGAG
CCTGACTTTC GAGCCGTGCT CGACGCGTTG ACTGTGGCCG TGTATGCCAC CGACGCGGAG
GGGGTCGTCA CCTATTGCAA TGCTGCAGCT GCAGCCATCG CCGGACGCGA GCCGGAACTG
GGAAAGGATC GGTGGTGCGT CAGCTGGCAG CTGCGACGGC CGGACGGATC ACCGCTTCCG
CACGAACAGT GCCCAATGGC ACGTGCACTG AAGGAAAGGC GGCCGATCAG GGGCGAAGAA
CTGATCGCGG TTCGGCCGAA CGGCGCCGCG GTTCCGCTTC TGCCCCACCC AACGCCGATG
TTCGATGCCG CTGGCGCATT GACCGGAGCG GTCAATGTCC TCATCGATCT CAGCAACACC
AAGGACATGG AGCGAAGCTC CCGTTACCTC GCCGCGATCG TTGAGTCATC GGACGATGCG
ATTGTCGCGA AGGACCTAAA CGGAATCATC ACCAGCTGGA ATCGTGGTGC CGAGCGGCTT
TTCGGCTACA CGGCCGAAGA CGTTATCGGA AAATCGATCA CCATCCTCAT ACCCCAGGAC
CGGCTGAGCG AGGAGCCCGG CATCCTCGAA CGCATCCGTA GAGGGGATAA AGTTGACCAT
TTCGAGACGA AACGGCGTCG CAAGGACGGG AGTTTGATAG ACATTTCGCT CACCGTTTCT
CCCGTCAGAG ATGCTACCGG GCGCATCGTC GGCGCTTCCA AGATCGCTCG CGACGTCACC
GAGACCAAGC GCGCGGCAGA AGCATTGTCA GATCGCTTTC GCGAGCAGGC GGCGTTGTAT
CGCTTCACGG AAAGAGTGCA GCGTACCAAG CGGATCGAAG ACGTCTTCGA GGCCGCGCTG
GACGCGATCC TGGAAGCGTT GAGCTGTGAC CGCGCCTCCA TTCTGCTGTT CGATCCCTCC
GGGACCATGC GTTTTGTGGC TTCGCGGGGT CTTTCAGAGG CCTATCAGAG CGCTGTCGAC
GGGCACTCGC CCTGGGCTTC GGGCGCAAGC GAACCCGAAC CGATCTTCGT CGAAAATGTA
GACAGTACGG ACATGTCGCG GGCGTTGAAG GAGGCCATTG CCCAGGAGGG TATCGGCGCT
CTCGGCTTTT TCCCTCTGGT CCTGGACGGA AAGCTCATCG GCAAGTTCAT GACCTATTAC
GACGAGCCGC ACCGGTTTGC GGAATCCGAA ATCGGCGTAG CGGTGACCAT CGCACGGCAA
CTAGGTTTCA GCCTTCAGCG CATGGAAACC GAAAATGCGC GCCGTCAGGC AGAGGAACGC
TTGCGCCGTA ACGAGGCGAA CGAAAGAGCG CGCGCAGGCG AATTGGCCGC GATAATGGAA
GCGGTCCCGG CTCTGATCTG GATTGCGCGC ACGCCTGATT GCCACGTCAT CAGCGGAAAC
AAGAGCTCTT ACGAAATGCT GCGGCTGCCG CATGACAGCA ACCTGTCTCT GTCGGCTCCT
CCGGGCGAGC GCCCCACCAA CTTCCGCGTA TTCTCCGGCG GACGCGCACT GTCACCCGAT
GAACTGCCGG TACAAAGGGC AGCACGCGGC GAGGAAGTGC GGAACTTCGA GGAGGAGGTG
TGGTTTGAGG ACGGAAGCTC CCGATATATT TTCGGAAACG CAACGCCGTT GCGTGACGCC
GCAGGCGAAG TGATCGGCGC CGTCGCCGCC TCGGTCGACA TAACCGAGCG CAGGCAGGCG
GAAGAGGCAC TTCAGGAAAG CGAACGGCGC CTGCAGCTGG CGCTGGATGC TGGACATATG
GGCGCCTGGG AATGGAACCT TGGAACGGAT GAGGTGATCT GGTCACCCGG GCTCGAGGCT
CTGCACCGTC TCGAGCGTGG TAGCTTCGGA AGAACGCTTG CAGATTTCAA GCGCAACGTT
CATCCGGACG ATCTCCCCTT GATCGATCGC GAGATAGCCA AAGCCGTCGA GACCAAAGGA
GACTACCACG TCGTCTACCG TGCGCGCCTG CTCGACGGGA CCGTCCGCTG GATGGAAGCC
TTCGCGCAAT TTTCACCGAG CAACGGTCCA TCGAGGCGAT TGATCGGCGT CTGCATGGAC
ATCACGGAAC GCAGGGAGGC CGAAGCGCAG CGCAATCTCT TGGTGGCCGA ACTCAGCCAC
CGCGTGAAAA ATACGCTTGC AATCGTCGGC TCGATTGCTC GACAGACCTT CTCGACCAGT
CCAGACGCGC GCACGGCGCA CCGTTCGTTC GATGCGCGCA TCAGGGCGCT TGCGCAAACA
CACACTCGCC TCGCCGAGGC GAGTTGGTCC GGCGTTTCCT TGCAGACCGT GCTGTACGAC
GAACTGGCCC CCTATCAGGA TGACGGCAGG ACCAATGTCA AGCTTCAAGG GCCGACAGCA
ATGTTGCCGC CCAAGCATGC GCTCACCCTT GGCATGGCGG CGCATGAGCT TGCCACCAAT
GCCGCGAAAC ACGGGGCACT TTCCGTCAAG AGCGGCAAAG TGGATATCGA GTGGGTGGTT
GACGTGGACA CCGATCGGCT TCGGATCTGC TGGCGCGAGT CGGGCGGGCC GCCCGTTGTC
ACACCCGCGC ACAATGGATT CGGTCGACTG CTGCTCGAGC GTGTCCTGGC TTCGGATCTT
GGCGGCGAAG TGCACCTCGA ATTCAAGCCG CAGGGGCTGG TTTGTACGAT CGATGTTCCG
TATCCGCGCG GGGCTCCGGG ATGA
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| Protein sequence | MHGAEILPKG VFDDETSLHE PDFRAVLDAL TVAVYATDAE GVVTYCNAAA AAIAGREPEL
GKDRWCVSWQ LRRPDGSPLP HEQCPMARAL KERRPIRGEE LIAVRPNGAA VPLLPHPTPM
FDAAGALTGA VNVLIDLSNT KDMERSSRYL AAIVESSDDA IVAKDLNGII TSWNRGAERL
FGYTAEDVIG KSITILIPQD RLSEEPGILE RIRRGDKVDH FETKRRRKDG SLIDISLTVS
PVRDATGRIV GASKIARDVT ETKRAAEALS DRFREQAALY RFTERVQRTK RIEDVFEAAL
DAILEALSCD RASILLFDPS GTMRFVASRG LSEAYQSAVD GHSPWASGAS EPEPIFVENV
DSTDMSRALK EAIAQEGIGA LGFFPLVLDG KLIGKFMTYY DEPHRFAESE IGVAVTIARQ
LGFSLQRMET ENARRQAEER LRRNEANERA RAGELAAIME AVPALIWIAR TPDCHVISGN
KSSYEMLRLP HDSNLSLSAP PGERPTNFRV FSGGRALSPD ELPVQRAARG EEVRNFEEEV
WFEDGSSRYI FGNATPLRDA AGEVIGAVAA SVDITERRQA EEALQESERR LQLALDAGHM
GAWEWNLGTD EVIWSPGLEA LHRLERGSFG RTLADFKRNV HPDDLPLIDR EIAKAVETKG
DYHVVYRARL LDGTVRWMEA FAQFSPSNGP SRRLIGVCMD ITERREAEAQ RNLLVAELSH
RVKNTLAIVG SIARQTFSTS PDARTAHRSF DARIRALAQT HTRLAEASWS GVSLQTVLYD
ELAPYQDDGR TNVKLQGPTA MLPPKHALTL GMAAHELATN AAKHGALSVK SGKVDIEWVV
DVDTDRLRIC WRESGGPPVV TPAHNGFGRL LLERVLASDL GGEVHLEFKP QGLVCTIDVP
YPRGAPG
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