| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_4643 |
|---|
| Symbol | |
|---|
| ID | 5319288 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009620 |
|---|
| Strand | + |
|---|
| Start bp | 1152594 |
|---|
| End bp | 1153451 |
|---|
| Gene Length | 858 bp |
|---|
| Protein Length | 285 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640776441 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_001313373 |
|---|
| Protein GI | 150376777 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0395] ABC-type sugar transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.210049 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.0503947 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCAGC CCTCTATGAT CAACCGCTAT CGCTGGTACG AACTCCTTGC CATCTACGCG
GGTATCTTCG TCTTCTTAAG CTTCATCCTC GCACCCTTCG TCGAAGGCTT TCTTGTTTCG
CTGAAGCCGC TTGGGCGCCT TTTTTCCTCT CCCTATCGCT TCTGGCCGGA AAACGGTTCC
TTCGAGGCCT ATCGCACGAT GTGGGTGAGC GTTCCGGGCT TCGCCCGCTA TATCTTCAAC
TCCTTCTTTA TTTCCATCAT CGTAACAGCC GTCGTGCTGG CGCTGGTGGT GCCGGCCGCC
TACGCTCTTG CGCGCTTCAA ATTCCGTGGC AGCGGGGCGT TGCTTGCCGC GTTCCTCGCG
GTCAACATGT TCTCGGGCGC CGTGCTGCTC ATCCCGCTCT TCCGGTTGAT GCGCAGCTTC
GGCGTGCTGA ACACCTACTT CGCCATGATC GTGCCTGGTG TCGCCTTCCT GATACCCTCG
GCCATCTGGC TTCTGCGCAC CTACATGATG CGCATACCGC GCGAGTTGGA CGAAGCAGCC
TTCGTCGATG GTGCAAGCCG CTTCTACACG CTGCGCCGCG TGATCCTGCC CATCGCCATG
CCGGGCATCA CAGTCGTGGC GATTACCACC TTCATCGGCT CCTATGCCCA GCAGTTCATC
TTCGCGCTGA CCTTCAACTC CAAGACCGAG TACATGCCGT TGCCCGTGGG CCTTTTCGCC
TATTTCGGCC GCCAGGAAGT GGTCTGGAAC GAGCTGATGG CAGCCAGTTT CGTCGGCATC
GCACCCGCCG TGATCGTGAT CTTCTTCCTG CAGCGCTATC TCGTCAGCGG GCTGACCGCC
GGCGCGGTGA AACAATAA
|
|---|
| Protein sequence | MSQPSMINRY RWYELLAIYA GIFVFLSFIL APFVEGFLVS LKPLGRLFSS PYRFWPENGS
FEAYRTMWVS VPGFARYIFN SFFISIIVTA VVLALVVPAA YALARFKFRG SGALLAAFLA
VNMFSGAVLL IPLFRLMRSF GVLNTYFAMI VPGVAFLIPS AIWLLRTYMM RIPRELDEAA
FVDGASRFYT LRRVILPIAM PGITVVAITT FIGSYAQQFI FALTFNSKTE YMPLPVGLFA
YFGRQEVVWN ELMAASFVGI APAVIVIFFL QRYLVSGLTA GAVKQ
|
|---|
| |