Gene Smed_4586 details

Gene Information

• Locus tag: Smed_4586
• ID: 5319002
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Sinorhizobium medicae WSM419
• Kingdom: Bacteria
• Replicon accession: NC_009620
• Strand: +
• Start bp: 1082026
• End bp: 1082796
• Gene Length: 771 bp
• Protein Length: 256 aa
• Translation table: 11
• GC content: 61%
• IMG OID: 640776387
• Product: polysaccharide deacetylase
• Protein accession: YP_001313319
• Protein GI: 150376723

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 0.428823
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 30
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAAGATGG GATCCGCCTG GCAAAGGTGC GTGGACAGGC TCGACGCGCT GCAGGATGGA 
GGCAAATGTA TCGACTTCTG GCTGCGGGAC GACGATGCCG TGGAACCGTC TCCCGCCCTT 
GACCGGTTGC TCGATCTCAC CGGCCGCTTC TCGGTACCTG TGACCCTGGC CGTCATACCG 
GCAAGCACCG ACGAGCGCCT TTCGCGATCT CTCTCCAGTC GCATGCATGT CGATGTCGCC 
GTCCACGGAT GGTCGCATCG AAACCATGCC CCAGCCATTG AAAAACGGCA GGAGCTCGGT 
GCTCACAGAC CGCGGGAGAC CGTTGCTGCC GACCTGCGCG CCGGATGGGC TCGTCTGTCC 
GCGCTTTATC CGGCTGCTCT GGCGCCTCTG CTTGTTCCGC CCTGGAACCG GATCGATCCT 
GGGCTGGTCT CTGAATTGCA AGAAATCGGT TTCGAGGCGC TTTCGGTTTT CGGACCGGAG 
GACGGCGAGA AGTGCGCCGC GTTCCGGGAT ACCGGGCTAC AGCTCATAAA TACCCATGTG 
GACGTGATGG ACTGGCACGG CACCCGCGGC TGTCGTCCGC ATGGCGATAT CCTCCGCGAC 
ATCGATCGCC GGCTGGATGA AGTCGAAAAC AGCGGCGGGT CGGTGGGTAT TCTCACCCAT 
CATCTCGTTC ACGACGAGAG CGTGTGGGAG TTCCTTTCAA AGCTTTTCGA GATCACCACC 
TCGAACCCGG CCTGCCGCTG GCGCAGGATC ACTGAGCTTA TAGATCGATG A 

 

Protein sequence

MKMGSAWQRC VDRLDALQDG GKCIDFWLRD DDAVEPSPAL DRLLDLTGRF SVPVTLAVIP 
ASTDERLSRS LSSRMHVDVA VHGWSHRNHA PAIEKRQELG AHRPRETVAA DLRAGWARLS 
ALYPAALAPL LVPPWNRIDP GLVSELQEIG FEALSVFGPE DGEKCAAFRD TGLQLINTHV 
DVMDWHGTRG CRPHGDILRD IDRRLDEVEN SGGSVGILTH HLVHDESVWE FLSKLFEITT 
SNPACRWRRI TELIDR