Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_4354 |
Symbol | |
ID | 5318203 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009620 |
Strand | + |
Start bp | 852461 |
End bp | 853792 |
Gene Length | 1332 bp |
Protein Length | 443 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640776159 |
Product | O-antigen polymerase |
Protein accession | YP_001313092 |
Protein GI | 150376496 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3307] Lipid A core - O-antigen ligase and related enzymes |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.201605 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 0.814699 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATCGCG GGAGCTACGC AGAGGCCGAG CGGACGAGTG GATCGACGGC ACGTGTCGGG ACCGCCCTCT TCATCGCGAT TTTCCTGTTC TTCTGGATTT CCATCAACCC CTTCGTGGAC TTGACCGGCG AGGCGGTGCT GGATCCTTCC GCCGGAAATT CCAACCGGCT GAACCAGATC ATCTCGCTCC TGCTTTTCGC CGGCATGCTC TGTTACGGAC TGATCCATCC CTTGCGGGAA ACTATTCTGC GGCCCCGGTT GCTGCTGGCG ATCCTCTATT GTTGGTTCAT CGTCGTTTCG CTGATCTCGG CTCATCCGAT GCTCGGCATC AAGGGCGTGA TCCTTTCCGT AATGGTCACC GTCAATGCCA GCATCTACCT CTTGCTGCCC ACTTCGGAAC GCCACTTCGC CAGGATGCTC GGTATCGCCA TCCTCGTCAT GCTGAGCGTC GCCTATTACG GCATCGTCTT CAACCCGTCG CTCGCCATCC ACCAAGCCAC GGAACTGCGC GAACCGATGA ATGCAGGTTT GTGGCGAGGT CACTTCCCTC ACAAGAACAG CGCCGCGGCT GCGATGGTGA TCGCAGCCTT CATCGGCCTC TTCGTCATGA ACGCCTGGTC GCGCGTCGCC GGCATCGCCA TCGTCGCGCT TTCCTTCGTC TTCCTCGTCA ATACCGGGGG GAAAACGTCT ACGGCAATGC TGCCGGCGAT TCTGCTGGTC GCCTTCCTTT TCGAAAAGGT GCGCTTCCTT CGCATCCCGA TTGCCGTTGG CGGCGTCGGC CTGTTCAATC TGTTCGCCGT CGGCTCGGCC GTCATTGTTC CCTTGGGTGA ATTCATCAAC GGTCTCGGCG TTGACGCAAC CTTTACCAAT CGCGCCGATA TCTGGCGTTT CGCCTTCGGC GCGCTCGCCG AACAGCCCCT CACAGGATAT GGCTTCAAGG CTTTCTGGCA GACGGAAGAA CTCGTCTATA GCGGCGGCAC GGTTGAGACC TGGGCCGTCG CGGCCGCCAA CGGACATAAC TCCTACCTCG ATATCGCCCT GATGACGGGA TTTCCCGGAC TCGCCCTGAC CCTGATCTGG ATACTCTTCC TACCGCTCCG CAACATTGCG CGAATCGCTC CGGAGCGCGA ACACACGCAT CTGACGAGGC TCTTCGTTCG CATATGGCTC TACACGATCT TCAATGCCGG CCTCGAGAGC CTCTTCTTCG AGGGAGGAAG CCTTCTGTGG TTCACGTTCA TGGTCGCGCT CTACGGACTT TCCCTGCAAT CCAGCGCGGA ACTCGCGGCC GTTCCGGCGC GCGCTCGTGA GGGGAGGCTC GTGCATGCTT GA
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Protein sequence | MDRGSYAEAE RTSGSTARVG TALFIAIFLF FWISINPFVD LTGEAVLDPS AGNSNRLNQI ISLLLFAGML CYGLIHPLRE TILRPRLLLA ILYCWFIVVS LISAHPMLGI KGVILSVMVT VNASIYLLLP TSERHFARML GIAILVMLSV AYYGIVFNPS LAIHQATELR EPMNAGLWRG HFPHKNSAAA AMVIAAFIGL FVMNAWSRVA GIAIVALSFV FLVNTGGKTS TAMLPAILLV AFLFEKVRFL RIPIAVGGVG LFNLFAVGSA VIVPLGEFIN GLGVDATFTN RADIWRFAFG ALAEQPLTGY GFKAFWQTEE LVYSGGTVET WAVAAANGHN SYLDIALMTG FPGLALTLIW ILFLPLRNIA RIAPEREHTH LTRLFVRIWL YTIFNAGLES LFFEGGSLLW FTFMVALYGL SLQSSAELAA VPARAREGRL VHA
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