| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_4252 |
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| Symbol | |
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| ID | 5318465 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009620 |
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| Strand | + |
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| Start bp | 738913 |
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| End bp | 741507 |
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| Gene Length | 2595 bp |
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| Protein Length | 864 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640776057 |
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| Product | outer membrane autotransporter |
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| Protein accession | YP_001312990 |
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| Protein GI | 150376394 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3468] Type V secretory pathway, adhesin AidA |
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| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGGACA TTTCGCCGGG CCGCACAAGC TTCGCGGCCA GTGACAGGGC ACTTCGCCGC
TTGTCGATAT TGAATGCTCA TGTCTTGCCG GGGGCTCCGT CTGCCTCAAG CGATCGCATT
CGGTGCGAAT TCAACAAACT CCTTCTCGGT TCGGTTGCCT CGATTGCGCT CTTTTGCAGC
CTCGACTCCG AGGCTCGGGC GGCCTGCGTC GAAACGAGCC CCGGCGCCTA CGACTGCTCG
GGGACGGGCC CCGGTCCAAC ATTTACAGGG CAGTCCGTTA CGATCAATGC CGATCCCACC
GCGAGCTTCA CGAGTGATGT CTCGATCACC GGACCCGGCA CGAGCACGCT CAACAATAAC
GGCACGCTCA CCAACAGCCT GCGCGCCACG GACAACGACC GCTTCACGCT CAACAATCGC
GGCCTGATCG ACGGGACGAT TTTTCTCGGC GGCTCGGGAG CGAACGTTAT TATCAACTAT
GCCGGGGGCG ACGTTCAGAA CGGCGTCACG AGCACGGGAG ATTCCCACGA CACAGTAATC
AACCGCGGCT TTTTTGCCGG GTCGATCGTT CTCGGCGACG GATACGACGT GCTGGGTCTG
ATTGAGGGGA CCGTCCAGAC ATCTGTCGAT ATGGGAGCGG GCGACGACCA GTTCACCTGG
CTGGTCGGAA ACATTGCTGC AACCGTCCAG ATGGGCGAGG GCGACGACCG AGCGGTCTTC
GGAAGCCTGA CGCAGCAGAA TCTCAGCGCC GGCAAGAGGG TCGACGGCGG TCTGGGAATC
GACACCCTGG TGTGGGAGAA TACGACCAAC GACGATGGAG GCGGTTCGGG CGATCATCCG
GAAAACATCG TCAACTGGGA GGAAATCGAG CTACGCAACG GCTCGGAAAT GACCTTCATC
TACAGCACCG GCAATCTGAC GCTCGGCGAT TCCGCATCCG GAACCGGGAC GCTCTCGATC
GACGAGACGA GCGCGGTCAG GGCTGGAAAT TCCTTCGGCT ATGGCGTCAG AGCGTTCGAT
CCATCGCAAT TGGTGACGGT CTACAATGCC GGCATCATCG ATATGACGAA CGACACGGTG
AATGTCGGTG ATCTCCTGCA CGACACCTTC ACGGTCTACG GCAACTATGT CGGCCAGCAG
GGTGGGCTGC AGCTGCACAC GGTGCTCGAA AGCGACGATG CGCCCTCGGA CAAGCTGGTC
ATCAGCGGCA CGGGCGCGAG CGCCTCTGGC GGAACCTCGA TTTTGATCAC CAATGTCGGG
GGGCAGGGAG CGCTGACGCT CGCCGACGGC ATCAGGGTCG TGGATGCCAC TGCCGGTGCA
ACCACTGAGG GGACTGCCTT CACGCTGGGC GCTCCCGTCG CAGCAGGCAT TTTCGAGTAT
AAGCTCTATC GCGGCGGTCT GACCGAAGAT CCGGACAACG ACGACGACTG GTTCTTACGC
TCCGGCGGCG TTTCGCCACC ACCGCCGCCG CCACCGCCGC CACCGCCGCC ACCGCCACCG
CCGCCGCCGT CACCACCGCC GCCGCCGCCG CCGTCACCAC CGCCGCCGCC GCCACCGCCG
CCGCCACCGC CGCCGCCGCC GCCGCCGCCG CCGCCACCGC CGGGACCGTC GCCGATCACG
CCGTCGGTAC GGCCGGAAAT ACCCGGCTAC ATCGTGAAGC CAGCGCTTAT GCAGAAGATG
GGCGTGGCAG CCATTGGCAC CTTTCACGAG CGGCAGGGCG ACCAATTCCT GCTGAACAGC
AACGGGTATC TCCCCGGAGC GTGGGGACGG CTGTTCGGCG AGTCGTTCGA TCAAAGCTGG
TCGTCCAAGA TCAGCAGGTT CGAATTCGAG GTCAGTCCGT CCTCCTCGGG AGAGCTGTGG
GGACTTCAGG CCGGTCAGGA CTTGATCGGA GCCCTGCACG ACGACGGAAG CCAGGATCGC
GTCGGCGTGT TCTTTGCTTA TACCGGCACG TCGGGATCGA ACGGAGGCAA TACGCTCGGG
AGGCTGCAGG TCGAATCGGG CTCGATCGAT CTCCATGCCA ACTCGATCGG CGCCTATTGG
ACGCATATCG GAGCGGACGG CTGGTATGTG GACAGTATAG GGATGTACTC ATGGCTGGAT
GGGGGTTCGA ACTCCGATCG GGGCATCGGG GTCGACACAT CCGGGAACTC GACCGCCCTT
TCGATCGAGG CGGGTTATCC GTTCAGGTTC GATAACGGAT GGGTGCTCGA GCCACAGGGC
CAGCTTATCT GGCAACATGT AGACCTGGAT GACGCGAATG ACCGCTTCAC CGGCATCGAC
TATGAGTCCT TCGGAACATG GACGGGCCGT CTCGGTGTGA GGCTCGAAGC AAACACGACG
ATGAACGATG TTCCAGTCCA GCCCTTCGCC AGCGTCAACT TGTGGCATGA TTTCGATCAG
GACTATAAGG TCTCGTTCAA CCGGGTTCCT GTCGTAACAG AACTGGAACA GACGTTGCTC
GAATTGAATG TTGGGTTTTC GGCCCAGATG AGCGAGACGG TCAGCGTCTA TGGCGGCCTG
CAGTTTGCGA CAGGCCTCGA CGATGACGAC AACAGGGGCT ACGGCGGCAA TATAGGCTTG
CGCATCAAAT GGTAG
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| Protein sequence | MPDISPGRTS FAASDRALRR LSILNAHVLP GAPSASSDRI RCEFNKLLLG SVASIALFCS
LDSEARAACV ETSPGAYDCS GTGPGPTFTG QSVTINADPT ASFTSDVSIT GPGTSTLNNN
GTLTNSLRAT DNDRFTLNNR GLIDGTIFLG GSGANVIINY AGGDVQNGVT STGDSHDTVI
NRGFFAGSIV LGDGYDVLGL IEGTVQTSVD MGAGDDQFTW LVGNIAATVQ MGEGDDRAVF
GSLTQQNLSA GKRVDGGLGI DTLVWENTTN DDGGGSGDHP ENIVNWEEIE LRNGSEMTFI
YSTGNLTLGD SASGTGTLSI DETSAVRAGN SFGYGVRAFD PSQLVTVYNA GIIDMTNDTV
NVGDLLHDTF TVYGNYVGQQ GGLQLHTVLE SDDAPSDKLV ISGTGASASG GTSILITNVG
GQGALTLADG IRVVDATAGA TTEGTAFTLG APVAAGIFEY KLYRGGLTED PDNDDDWFLR
SGGVSPPPPP PPPPPPPPPP PPPSPPPPPP PSPPPPPPPP PPPPPPPPPP PPPPGPSPIT
PSVRPEIPGY IVKPALMQKM GVAAIGTFHE RQGDQFLLNS NGYLPGAWGR LFGESFDQSW
SSKISRFEFE VSPSSSGELW GLQAGQDLIG ALHDDGSQDR VGVFFAYTGT SGSNGGNTLG
RLQVESGSID LHANSIGAYW THIGADGWYV DSIGMYSWLD GGSNSDRGIG VDTSGNSTAL
SIEAGYPFRF DNGWVLEPQG QLIWQHVDLD DANDRFTGID YESFGTWTGR LGVRLEANTT
MNDVPVQPFA SVNLWHDFDQ DYKVSFNRVP VVTELEQTLL ELNVGFSAQM SETVSVYGGL
QFATGLDDDD NRGYGGNIGL RIKW
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