| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_3848 |
|---|
| Symbol | |
|---|
| ID | 5318723 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009620 |
|---|
| Strand | + |
|---|
| Start bp | 306037 |
|---|
| End bp | 307020 |
|---|
| Gene Length | 984 bp |
|---|
| Protein Length | 327 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640775660 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_001312593 |
|---|
| Protein GI | 150375997 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1176] ABC-type spermidine/putrescine transport system, permease component I |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTAGATA CGACGACAAT ACGCACCCGA ACCGCCGAAC CCCTGCGGGT GCCCCGATAT
GCCGGCTGGA TCGGCAAGAC CGTCGGTTCG GGTCTCTATC GCCATACCAT CGGCCGGCTT
GCCGACAGCC GCCCTGTTCG CCTGGCGCTG CTTGCCGGCG TCCCCCTCTT CTGGATCGCA
GCGCTGCACA TCGGCCCAAT CTTCCAGATG GGGCGGATCA GCTTCATGGC AGACTATCCG
CCATCGCCGG ATGGAGGCTC CGCCTACACG CTGGCCAATT ACAAGCTGTT CTTCTCCGAC
CAGCTATACT TCGTGCCCTT CCTCCGCAGC CTCGTCTTCG CGGCAGTCGT CACGCTCTCG
ACGCTGGTGG TCGTCTATCC GGTCGCATAT TATGTCGCGA AGATCGTCCA GCCGAAGAAC
CGTGTGCGTG CCCTGCTGCT TCTCTTGATT CCGTTCTGGG CGGGAGAGCT CATCCGCACC
TTTTCGGTCA TCATGCTCCT GGCCAATCGC GGCGCGGTCA ACGTCGCGCT GCGCGAACTC
GGCTTCATCG ATCGGCCCAT CCCGATGCTC TACACCTCCT TCTCTCTGAG CTTCGGCGTC
ATCTATCTGC TGGCACTCTA TATGCTGCTG CCGCTCTATT CGGCGATCGA GAAGATACCG
ACGCAGCTCG TTCACGCGGC GGCCGACCTC GGGGCCAGCC CCTTTCAGCG CTTCCGCCGC
GTGATCCTGC CGCTGTCGAA GGACGGCATC GTCTCTGGCT GCAGTCTCGT ATACCTGACC
TCGGTCGGCG TTTTTGCGGC ACCGCTCCTG CTTGGCGGCC CGAATACCGT CATTTTCCCC
GAGGTGATCG CGACCCTCTT TCACTCCTCG AACGACAAAT GGCCCGAAGG CGCCGCCTTC
TCCATGCTGC TGCTCGCGGT TTCGCTAACC ACCGTCGGCC TGTTCATGCG GGTGATCGGC
GGCCGGTCCG TCCGGCTGAT GTGA
|
|---|
| Protein sequence | MVDTTTIRTR TAEPLRVPRY AGWIGKTVGS GLYRHTIGRL ADSRPVRLAL LAGVPLFWIA
ALHIGPIFQM GRISFMADYP PSPDGGSAYT LANYKLFFSD QLYFVPFLRS LVFAAVVTLS
TLVVVYPVAY YVAKIVQPKN RVRALLLLLI PFWAGELIRT FSVIMLLANR GAVNVALREL
GFIDRPIPML YTSFSLSFGV IYLLALYMLL PLYSAIEKIP TQLVHAAADL GASPFQRFRR
VILPLSKDGI VSGCSLVYLT SVGVFAAPLL LGGPNTVIFP EVIATLFHSS NDKWPEGAAF
SMLLLAVSLT TVGLFMRVIG GRSVRLM
|
|---|
| |