Gene Smed_3727 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_3727 
Symbol 
ID5318593 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009620 
Strand
Start bp169930 
End bp171162 
Gene Length1233 bp 
Protein Length410 aa 
Translation table11 
GC content62% 
IMG OID640775540 
Producthypothetical protein 
Protein accessionYP_001312473 
Protein GI150375877 
COG category[V] Defense mechanisms 
COG ID[COG1566] Multidrug resistance efflux pump 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.291811 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCCTCA ATCATCGGCT CACACGTATT ACCGTCGGCA TCCTGCTGCT GGCGCTTGCA 
ATCGCCGTCC TGCTGCCCGG ATTGACCGGA TACAGCAGCC TTGACGGTAC GGTGAACGCC
CGTTTTGCCG TCATAAACGC ACCCGTCGAC GGTGAGATCG ACAAGGCGCC GCCTCGGATC
GGGACTCCGG TGAAAGAGGG TGAAACGCTC GCGACAATCA GCAACGAGCG GGTCAACAGG
GCGGTGCTGG CGTCGCTGCG CACGGATCAT CGAACCGCCC TCGAGCGCGT TGCGGCGTTG
CGGCGGGAGC GGGACGAACT CGTACGGCTG CGGGACGATC TTGCGGGGCG GCTGGACATT
TTCCGGAACG CGACCATCGC CAGTCTGGAG CGTGAGCTCC AGATTCTGCA GAAAAGGGTC
GAGGTGTCGC GCGCGCAGGA GGTGGTGGCA AGGGTCGATC TGGACCGGCG GCAGGACCTC
GAGTCCAAGG GCATTTTTAC CCGCAAGATG GTGGAATCAG CGGAAGCCGC CGGTGCGGCC
GCGGGCGGCG AGCTCGAGAT CAGCAACCTG ACGGTTGAAT TGTTGCAGGA ACGCCTCTCG
GCCGTGCGAA AGGGCATATT CATCGTCGGC GACGGCCAGA ACGACGTGCC CTATTCCCGG
CAGCGCCAGG ACGAGGTCAT CGTCCGCATC CACGATCTCA ATACGCGGAT CGCGGAGAAC
GAGACTCGGG CAAAACAGAC AGACCAACAG ATTGCCGAGG AGGAAAGGCG GGTCCTCAAT
CTCGAATCGG CAACGATCCC GTCACCCCTG GACGGTGTCG TGTGGACCAG AAATGTGGTC
AGCGGCTCAA ATGTCGTTCT GAACAGCGAA GTGATGCGCA TCCTCGATTG CCGCGATCTG
TTCGTGGATA TCCTCGTTCC TGAAGTCGAC TATGACGAAA TCTATCCCGG CCGCGACGCC
GAGGTTCGGC TCTTCGGTCG GGGCGATGTC TTCAAGGGCC GGGTCCAGGC AGTCAAGGGC
TCGTCCGCCG TCGTCGAGAA AGACTCTCTG GCGGCCAACG AGCCGGAGGC GGATGAGCGG
AATGCGCGCA TCCGCGTCAC CCTCGCGCCC TCGGCACTCA ACGCCGATTT CGCGAACTTC
TGCCAGGTCG GTCGGACGGC GCAGGTACGG TTCTCAAAAC GCAGCCTTCA TGTGGCGCAG
TGGATTCAAA GCTTGTGGTT CAATCTCTTC TAG
 
Protein sequence
MILNHRLTRI TVGILLLALA IAVLLPGLTG YSSLDGTVNA RFAVINAPVD GEIDKAPPRI 
GTPVKEGETL ATISNERVNR AVLASLRTDH RTALERVAAL RRERDELVRL RDDLAGRLDI
FRNATIASLE RELQILQKRV EVSRAQEVVA RVDLDRRQDL ESKGIFTRKM VESAEAAGAA
AGGELEISNL TVELLQERLS AVRKGIFIVG DGQNDVPYSR QRQDEVIVRI HDLNTRIAEN
ETRAKQTDQQ IAEEERRVLN LESATIPSPL DGVVWTRNVV SGSNVVLNSE VMRILDCRDL
FVDILVPEVD YDEIYPGRDA EVRLFGRGDV FKGRVQAVKG SSAVVEKDSL AANEPEADER
NARIRVTLAP SALNADFANF CQVGRTAQVR FSKRSLHVAQ WIQSLWFNLF