| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_3714 |
|---|
| Symbol | |
|---|
| ID | 5318527 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009620 |
|---|
| Strand | - |
|---|
| Start bp | 156071 |
|---|
| End bp | 156901 |
|---|
| Gene Length | 831 bp |
|---|
| Protein Length | 276 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640775527 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_001312460 |
|---|
| Protein GI | 150375864 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAGGCA GGCTCAAGGG CCGCAGCGCG GTCATCACAG GCGGCTTGAC GGGGCAGGGG
CTGGCGATCG CGGAGGCGTT TGCTGCCGAC GGCGCCAATG TCGCCGTCGG CTCCTTCGTC
CGCGAAGCGT CCGGCCGTCA GGGCGATGCC GCTGCCTATC CCGATCCGCG GGAGATCGCC
GAGATCCGGG TGCGGCTCGC CGCTGCCGGC ACGGCGGTTC ACGCCGGCCA CCTGGACGTT
CGTGACAGCG AGGCGATCGA GCAATTCGTC GCGGCGGCGG AGGCCGCATG CGGCCCCACC
GACATTCTCG TCAATGCCGC CGGTACGACT GCAGAGCAGC CGGTGTCGGG CCATTCCGAC
GAATTATGGC TGAAGATCAT AGATACCAAT CTGAACGGCG CATTCCGTAT GACCCGGAGA
CTGCTGCCCG GAATGATCGG GCGCAAATGG GGTCGGATCA TCAATATAGG CTCGACGGCT
GCCACTGTCG GCTGGAAGGA CAATCCGGCC TATTGCGCCT CGAAGTCGGG ATTGCTCGGG
CTCACCCGCT GCGTGGCGCT CGAAGGGGCG CCGCATGGTG TCACCTGCGT GATGATCAGC
CCGACCTGGG TGGAAACGGA ACTGATGCGC CGCAACGTCA GGCAGGTCGT CGAACGGGAG
GGCAGCGGCC GGACTACGGA GGAGGCGATG GCCGATATCG CCGCCCAGAA CCCGCAGAAC
CGGATCATCC AGCCCGACGA GATAGCAGCC CTTGCCGCCT TCCTCTGCGG CGAGGGGGCA
AGGGGTATCA CCATGGAGAA CATACAGATC ACGGGCGGCG CACTTTGGTG A
|
|---|
| Protein sequence | MTGRLKGRSA VITGGLTGQG LAIAEAFAAD GANVAVGSFV REASGRQGDA AAYPDPREIA
EIRVRLAAAG TAVHAGHLDV RDSEAIEQFV AAAEAACGPT DILVNAAGTT AEQPVSGHSD
ELWLKIIDTN LNGAFRMTRR LLPGMIGRKW GRIINIGSTA ATVGWKDNPA YCASKSGLLG
LTRCVALEGA PHGVTCVMIS PTWVETELMR RNVRQVVERE GSGRTTEEAM ADIAAQNPQN
RIIQPDEIAA LAAFLCGEGA RGITMENIQI TGGALW
|
|---|
| |