| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_3575 |
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| Symbol | |
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| ID | 5317878 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009620 |
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| Strand | + |
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| Start bp | 197 |
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| End bp | 3505 |
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| Gene Length | 3309 bp |
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| Protein Length | 1102 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640775390 |
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| Product | Dtr system oriT relaxase |
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| Protein accession | YP_001312323 |
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| Protein GI | 150375727 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member |
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| TIGRFAM ID | [TIGR02768] Ti-type conjugative transfer relaxase TraA |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGCCGTTC CTCACTTCTC CGTCAGCCTC ATCACCCGTG GCTCCGGCCG CAGCGCAGTG
CTGTCTGCGG CATATCGGCA TTGCGCGAAG ATGGCGTACC AACGGGAAGC CCGAACGATT
GACTACACCC GCAAGACTGG ACTTCTTCAC GAGGAGTTCG TCATCCCGGA CAACGCACCG
GAATGGTTGC AGTCGATGAT CACCGATCGC TCGGTCTCCG ACGCAGCGGA AGCATTCTGG
AACAAGGCCG AGGATTTCGA GAAGCGCTCC GACGCCCAGC TTGCCAAGGA GGTCACAATC
GCGCTGCCGA TCGAGCTGAC GTCTGCACAA AACATTGCTC TCGTCCGTGA CTTCGTGGAG
CAGCACATCA GCGCCAAGGG AATGGTGGCG GACTGGGTTT ATCACGACGC GCCGGGCAAT
CCGCATGTCC ACTTGATGAC GACGCTGCGG CCCCTGACGC AACAGGGTTT CGGCGCCAAG
AAGGTCGCCG TCCTTGGGCC GGACGGCTAT CCAATCCGCA ATGACGCCGG CAAGATTGTT
TACGAGCTTT GGGCCGGAAG TCTCGACGAC TTCAACGCCT TGCGCGACGG TTGGTTCGCC
TGCCAAAACC GCCATCTGAC GCTTGCCGGC CTCGACCTCC GCATCGATGG CCGTTCTTTC
GAGAAGCAGG GTATCGAGCT CGCTCCGACC CTCCACCTCG GCGCCGGCAC GAAGGCGATC
GAGCGGAAAG CGACGGCAGA GGCGAAGACG CTTTCGCTCG AGCGCCTGCA GCTACAGGAG
GACCTGCGGA GCGAGAATGC CCGGCGCCTT CAGCGTCGAC CGGAGATCGT GCTCGACCTG
ATCACGCGAG AAAGGAGCGT GTTCGATGAA CGCGACGTGG CAAAGATCCT GCATCGCTAT
GTTGACGATC CCGCGGTTTT CCGGAGCCTG ATGGCGCGCA TCCTGCAGAG CCCCGAGACA
CTCCAACTCG AACGCGAACG AACCGCTTTT GCCACCGGCA TCCGGGCTCC GGCAAAATAC
ACGACGCGCG CGCTGATCCG GCTCGAAGCG GAGATGGCAA ACCGTGCGAT CTGGCTCTCA
AGGCAATCCT CGCATCGGCT TCGGGAAGCG GTGCTGGAGG CGACGTTGGC GCGCCATTCG
CGCCTGTCGG ACGAACAGAA AACGGCGATC GAGCATGTTG CGAAAGCCGG CCGGATCGCC
GCTGTAATCG GTCGTGCCGG TGCGGGCAAG ACGACCATGA TGAAAGCGGC GCGGGAGGCG
TGGGAAGCGG CCGGCTACCG GGTGGTCGGC GGCGCGCTTG CAGGCAAGGC GGCGGAGGGT
CTGGAGAAGG AAGCGGGCAT CATCTCCCGC ACGCTGTCGG CGTGGGAGCT GCGTTGGAGC
CAAGGTCGCA ACCAGCTTGA CGCCAGGACG GTCTTCATTC TCGACGAGGC GGGCATGGTC
TCGTCCAGAC AGATGGCATG CTTCATGGAG GCCGCGACGA GGACGGGGGC AAAACTCGTC
CTTGTTGGCG ATCCGGAACA GCTTCAGCCG ATCGAAGCGG GCGCGGCGTT CCGCGCAATC
GCCGATCGCA TCGGCTATGC CGAGCTCGAA ACCATCTATC GTCAGCGTGA ACAGTGGATG
CGCGATGCGT CCCTCGATCT CGCCCGGGGC AATGTCGGCA AGGCTGTTGA GGCTTACCGT
GCCAACGGCA GGATGATCGG AGCCGAGCTA AAGGCTGAAG CTGTGCGGAA CCTTATCGTC
GACTGGAACC GGGACTACGA TCCGACGAAG ACCACTTTGA TCCTCGCTCA TCTTCGCCGC
GACGTACGCA TGCTCAATGA GATGGCCCGG TCCAAACTCG TCGAGCGTGG CATCGTTGGC
GAAGGCTTTG CTTTCCGAAC CGCGGATGGA AACCGCAACT TTGCGGCCGG TGACCAGATC
GTTTTCCTTA AGAACGAAGG CTCGCTCGGC GTCAAAAACG GCATGCTCGG AAAGATCGTC
GAAGCTTCGC CGAACCGCGT TGTCGCGGAA ATCGGTGCGG GCGAGCACCA CCGCCAGGTG
ATCATCGAAC AGCGCTTCTA CAACAATCTT GACCACGGCT ATGCCACCAC AATTCACAAG
AGCCAGGGCG CAACGGTGGA CCGGGTGAAG GTGCTCGCTT CGCTTTCCCT CGACAGGCAT
CTGGTCTATG TCGCCATGAC CCGTCACCGC GACAATCTCG ACGTCTATTA CGGCGCCCGA
TCCTTTGCCA GGGCCGGCGG ACTGATCCAG GTTCTGTCAC GGAAGAATTC GAAGGAAACC
ACGCTCGATT ACGAGAAGGC CACCTTTTAT CGGCAGGCGC TACGCTTCGC CGAAGCCCGC
GGCCTGCACC TCCTCAATGT CGCCCGTACG ATCGCTCGCG ACCGGCTCGC CTGGACGGCC
CGGCAGAGCT CCAGGCTTGC CGATCTGGCT CACCGTCTCG TTCGGATCGG CCGCAAGCTC
GGGCTCGCCG CCGGCACCAA TCCAATCAAC TCGCAAAACA GCAAGGAGAC CAGGCCCATG
GTTGCCGGTA TCGCGACACA TCCGGAATCG GTGGAGCAAG CAGTCGCCGA CAAGCTCGCA
GCAGACCCCG GCTTGAAGAA GCAGTGGGAC GATGTGTCGA CCCGCTTCCA TCTGGTCTAT
GCGCATCCGG CAGCGGCGTT CAAGGCGGTG AACATCGACG TCATGCTGAA GGACGAGACC
GCCGCCAAAG CGACGCTCTC TAAAATCGCC AAGCAGCCGG ACAGCTACGG TGCACTTAAA
GGCAAGACTG GTTTGCTCGC CAGCCGCGCC GACAGGCAGG ACCGCGAGAG GGCGGTACGC
AACGTTCCGG CTCTGGTCCA GAGCCTCGAT GGTTATATGC GTCAGCGCGG CAGCGCCGAA
CGACGCTACC GGGCCGAGGA ATTGGAAGCC CGCCGCAAGG TAGCGATCGA CATCCCGGCG
CTATCTCCAG GCGCCCGGCA AATACTGGAG CGCGTGCGTG ATGCCATTGA CCGCAACGAT
CTTTCCGCTG CGCTCGAGTT CGCACGCGCC GACCGGCATG TGAAAGCTGA ACTCGACGGA
TTCGCAAATG CGGTCGACGC GCGCTTCGGC AAACGCACCT TCCTTCCACT GAGCGCCAGG
GACACAAACG GAGACACCTT CACGTCGGTC ACGGCAGGCA TGCATCCGGG CCAGAGGCTG
GAAGTCGAAT CGGCATGGAA AGCAATGCGC ACGGTGCAGC AACTCAGTGC CCATGAGCGC
ACGACTGAGG CCTTGAAGCT TTCAGAAACA TTGCGCCTGA GCAAGAGCCA GGGGCTCTCG
CTGAGATGA
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| Protein sequence | MAVPHFSVSL ITRGSGRSAV LSAAYRHCAK MAYQREARTI DYTRKTGLLH EEFVIPDNAP
EWLQSMITDR SVSDAAEAFW NKAEDFEKRS DAQLAKEVTI ALPIELTSAQ NIALVRDFVE
QHISAKGMVA DWVYHDAPGN PHVHLMTTLR PLTQQGFGAK KVAVLGPDGY PIRNDAGKIV
YELWAGSLDD FNALRDGWFA CQNRHLTLAG LDLRIDGRSF EKQGIELAPT LHLGAGTKAI
ERKATAEAKT LSLERLQLQE DLRSENARRL QRRPEIVLDL ITRERSVFDE RDVAKILHRY
VDDPAVFRSL MARILQSPET LQLERERTAF ATGIRAPAKY TTRALIRLEA EMANRAIWLS
RQSSHRLREA VLEATLARHS RLSDEQKTAI EHVAKAGRIA AVIGRAGAGK TTMMKAAREA
WEAAGYRVVG GALAGKAAEG LEKEAGIISR TLSAWELRWS QGRNQLDART VFILDEAGMV
SSRQMACFME AATRTGAKLV LVGDPEQLQP IEAGAAFRAI ADRIGYAELE TIYRQREQWM
RDASLDLARG NVGKAVEAYR ANGRMIGAEL KAEAVRNLIV DWNRDYDPTK TTLILAHLRR
DVRMLNEMAR SKLVERGIVG EGFAFRTADG NRNFAAGDQI VFLKNEGSLG VKNGMLGKIV
EASPNRVVAE IGAGEHHRQV IIEQRFYNNL DHGYATTIHK SQGATVDRVK VLASLSLDRH
LVYVAMTRHR DNLDVYYGAR SFARAGGLIQ VLSRKNSKET TLDYEKATFY RQALRFAEAR
GLHLLNVART IARDRLAWTA RQSSRLADLA HRLVRIGRKL GLAAGTNPIN SQNSKETRPM
VAGIATHPES VEQAVADKLA ADPGLKKQWD DVSTRFHLVY AHPAAAFKAV NIDVMLKDET
AAKATLSKIA KQPDSYGALK GKTGLLASRA DRQDRERAVR NVPALVQSLD GYMRQRGSAE
RRYRAEELEA RRKVAIDIPA LSPGARQILE RVRDAIDRND LSAALEFARA DRHVKAELDG
FANAVDARFG KRTFLPLSAR DTNGDTFTSV TAGMHPGQRL EVESAWKAMR TVQQLSAHER
TTEALKLSET LRLSKSQGLS LR
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