Gene Smed_3542 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_3542 
Symbol 
ID5324430 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp3748056 
End bp3748658 
Gene Length603 bp 
Protein Length200 aa 
Translation table11 
GC content59% 
IMG OID640792492 
Producthypothetical protein 
Protein accessionYP_001329193 
Protein GI150398726 
COG category[I] Lipid transport and metabolism 
COG ID[COG3963] Phospholipid N-methyltransferase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCTTGC GCTTGAGGGT GAAGGAAAAA TTCGGTCGGA AATTCGACGA AGAAATCCGC 
TTCTTCAAGG GTTGGATGAG CAACAGCCGC GCCGTCGGCG CGATACTCCC GACATCCTCG
GTGACGGCGC GCCGTATGGC AAGCGTCGTC GATCCGGACT CCGGCCTGCC CGTCCTTGAG
CTTGGCCCCG GCACCGGCGT GATCACCAAG GCGATCCTCG AGCGCGGCAT AGAGCCTGAA
AAGCTGATAT CGATCGAATA TTCGACCGAT TTCTACAACC AGCTCAAGGC GCAATTCGAC
GGCGTTCAGT TCATCAATGG CGACGCGTTT GATCTTGACC GCACGCTTGG TTCCCTGAAA
GACCAGCAGT TCGACAGCGT CATTTCCGCC GTACCGCTTT TGAACTTCCC GATGCACCGC
CGCGTCGAGC TGCTTGAAGA CCTGCTCTCG CGCATCCCTT TCGGCCGCCC CGTCATTCAG
ATTTCCTACG GCCCGATGTC TCCGGTCGTC GCCGTGCCGG ATAGCTACCG CATCCAGCAT
TTCGACTTCG TCGTGCGCAA CATTCCGCCC GCACAGCTCT GGGTCTACCG CAAGACGCAT
TGA
 
Protein sequence
MSLRLRVKEK FGRKFDEEIR FFKGWMSNSR AVGAILPTSS VTARRMASVV DPDSGLPVLE 
LGPGTGVITK AILERGIEPE KLISIEYSTD FYNQLKAQFD GVQFINGDAF DLDRTLGSLK
DQQFDSVISA VPLLNFPMHR RVELLEDLLS RIPFGRPVIQ ISYGPMSPVV AVPDSYRIQH
FDFVVRNIPP AQLWVYRKTH