Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_3388 |
Symbol | |
ID | 5324272 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | + |
Start bp | 3591205 |
End bp | 3593457 |
Gene Length | 2253 bp |
Protein Length | 750 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640792339 |
Product | 1A family penicillin-binding protein |
Protein accession | YP_001329044 |
Protein GI | 150398577 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0744] Membrane carboxypeptidase (penicillin-binding protein) |
TIGRFAM ID | [TIGR02074] penicillin-binding protein, 1A family |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCGAGCG GCAAATCAGG ACAGCGGATC GAGCCTTCCT TCGGCGGTAA CGACGACGGC GGCGAGCTGC GGGTCGACGC GAGCGATCGC GTGGCGGGCG GCGGACGCAA GCCGAAGCGC GCCAAGCCGC CCGAACGCGG CGCCAAGGGA GAAAAACGCG CCAGGCGTGC CGGCGGGCGC GGCTCCGGCA AAAGCGGTTC CGGCGGGTTC TTCGGCCTCG CCCGGCGGTT CGCCTATTGG TGCGTCGTGC TCGGCATATG GGGTGCGATC GGCGTCGGCG GGCTCGTGCT CTATTACGGA GCGCGCATGC CGAGCGCGAC GAGCTGGTCG ATCCCAGAGC GGCCGCCCAA CGTCAAGATT GTCGCTGCCA ATGGCGAGAT CATCGCCAAC AGGGGCGCGA CAGGCGGAGA GGCTGTCGCG CTCGAAGACA TGTCGCCCTA TATCCCTCAG GCGGTGATCG CCATCGAGGA CCGCCGATTC CATTCGCATT TCGGCGTTGA CCCGCTGGGG CTGGCGCGCG CCATGCTCAC GAACGTCATG AGCGGCCGCA TGGTCCAGGG CGGCTCCACG CTCACCCAGC AGCTTGCCAA AAACCTGTTC CTCTCGCCGG AGCGCACGCT CGAGCGAAAG GTGCAGGAGG TGCTGCTCGC TTTCTGGCTG GAGCAGAAAT ACACCAAGGA CCAGATCCTG GCGATGTATC TCAACCGCGT CTTCTTCGGG TCGAACGCCT ATGGCGTCGA GGCGGCTTCG CGGCGCTACT TCAACAAGTC GGCGCGCGAC GTCAATCTCG GCGAGGCGGC ATTGCTCGCG GGCCTTCTGA AAGCCCCTTC ACGGCTGTCG CCGGCCCGGA ACCCCGAAGC AGCGGAGGAG CGCGCGCAGC TCGTGCTTGG CGCCATGCGT GAGGAAGGCT TCATCAACGA TGCCGAGATC AAGACGGCGA TGTCGCAGGC GCCGACCCGG GCAAAGAGCT TCTGGTCCGG CGCCGAACAC TACGTCGCGG ATATGGTTAT GGACCAGCTC CCCGGCATGA TCGGCGAAGT TACACAAGAC CTCGTCATCG ACACGACCAT CGACCTTGCG CTCGAGAAGA GGGCCGAAGA GATTCTCGCC GAAAGGCTTG AGACGGAGGG CGGCAAGGTC AACGCCTCGC AGGCGGCGCT CGTCTCCCTC GACGGCACCG GTGCCATCCG GGCACTGGTT GGCGGCAGGG ACTATGCCGA AAGCCAGTTC GATCGCGCCT CCAAGGCCAA GCGGCAGCCA GGATCGGCCT TCAAGCCTTT CGTCTATGCA GCGGCACTCG AGATCGGCCG CACGCCGATG TCCGTTCGCA ACGACGTGCC TGTCAGGATC GGCAACTGGA CGCCTGAAAA CTATGACCAG AAATATCGAG GCGAGGTGAC GCTCGCCGAT GCGCTCGCCA ATTCGCTGAA CACCATCGCC GCCCAGCTGG TGATGGAGGT CGGGCCGCAA AACGTGGTCA AGCTCGCGCA CCGCCTCGGC ATCGATTCCG AGATGCAGGC CAATGCATCG ATCGCGCTCG GCACGTCGGA AGTGACGCTG GTGGAGCTGA CGTCCTCCTA TGCGCCTTTC ATGAATGGCG GCTACAAGGC GACGCCGCAC GTTATCCGGC GCATCTCTAC CGCCGACGGC ACCGTGCTTT ACGAGAACAC CTACGACAAT CCGCCCCGGG TGCTCGATCC GGCGGTCGTC AGCGAGATGA ACCGGATGAT GGTGCGCGTG CTGACTGACG GCACCGGCAA GAATGCACGT CTGCCGGGCT GGGAGGCAGC GGGAAAGACC GGAACGACGC AATCATTCCG CGACGCGCTC TTCGTCGGCT ACACCTCCAG CCTCGCGACC GGTATCTGGT TCGGCAATGA CGACGGCAAG TTCATGAAGA AGGTCACCGG CGGCGGCCTT CCCGCCCGTG CCTGGCATGA TTTCATGACG GCGGCGCATG AGGGCCTCTC GCCCTCGCCG CTCTTCGGCA CGACGGGCGT ACAGCCGGTT TTCGACCAAG GCATCGCGGC TGCGGAGGAG ATGCCGGTTG ACGGTTTCGA TACCGGTAGC CCGGATGTTT TTCCTGAGCG CCCGGCAGGT ATGGATGGCA TGGAAAGCAT GGACGGCATG GCCGCCGCCG ATCAGATCCG GCCGGCAGAA CAGGCGGGAG GGCCGATTCC GCCGGCGGGC GTCGGCGAGA CCACCGGAGG CACCCGCCGC ACGACGCTTT TCGATCTGCT GACCGGAGGC TGA
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Protein sequence | MASGKSGQRI EPSFGGNDDG GELRVDASDR VAGGGRKPKR AKPPERGAKG EKRARRAGGR GSGKSGSGGF FGLARRFAYW CVVLGIWGAI GVGGLVLYYG ARMPSATSWS IPERPPNVKI VAANGEIIAN RGATGGEAVA LEDMSPYIPQ AVIAIEDRRF HSHFGVDPLG LARAMLTNVM SGRMVQGGST LTQQLAKNLF LSPERTLERK VQEVLLAFWL EQKYTKDQIL AMYLNRVFFG SNAYGVEAAS RRYFNKSARD VNLGEAALLA GLLKAPSRLS PARNPEAAEE RAQLVLGAMR EEGFINDAEI KTAMSQAPTR AKSFWSGAEH YVADMVMDQL PGMIGEVTQD LVIDTTIDLA LEKRAEEILA ERLETEGGKV NASQAALVSL DGTGAIRALV GGRDYAESQF DRASKAKRQP GSAFKPFVYA AALEIGRTPM SVRNDVPVRI GNWTPENYDQ KYRGEVTLAD ALANSLNTIA AQLVMEVGPQ NVVKLAHRLG IDSEMQANAS IALGTSEVTL VELTSSYAPF MNGGYKATPH VIRRISTADG TVLYENTYDN PPRVLDPAVV SEMNRMMVRV LTDGTGKNAR LPGWEAAGKT GTTQSFRDAL FVGYTSSLAT GIWFGNDDGK FMKKVTGGGL PARAWHDFMT AAHEGLSPSP LFGTTGVQPV FDQGIAAAEE MPVDGFDTGS PDVFPERPAG MDGMESMDGM AAADQIRPAE QAGGPIPPAG VGETTGGTRR TTLFDLLTGG
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