| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_3245 |
|---|
| Symbol | |
|---|
| ID | 5324124 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | - |
|---|
| Start bp | 3424346 |
|---|
| End bp | 3425860 |
|---|
| Gene Length | 1515 bp |
|---|
| Protein Length | 504 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640792193 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001328904 |
|---|
| Protein GI | 150398437 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0802] Predicted ATPase or kinase
[COG3178] Predicted phosphotransferase related to Ser/Thr protein kinases |
|---|
| TIGRFAM ID | [TIGR00150] ATPase, YjeE family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.479121 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTCGC TAGAATGCCT GCTGACGGAC GAGGCCGCCA CCAACGAATT CGGCGAGGAC
CTCGCATTGG CGCTGAAAGC CGGCGATTGC GTCGCGCTCT CCGGCGACCT CGGCGCGGGA
AAGTCGACGT TCGCAAGAGC CTTCATCCGG GCAATGGCCG ACGACGAAGC GCTGGAAGTG
CCGAGCCCCA CCTTCACCCT GGTCCAAAGC TACGATCTCA GGATACCGGT CGCGCATTTC
GATCTCTACC GCCTTGCGGA CGCCTCCGAG CTGGACGAAC TCGGTTTCGA CGAGGCGCTC
ACTGAAGGCA TCTGTCTGGT CGAATGGCCT GACAGGGCCG AGGAGGCGCT CCCGGCTGTC
CGGATCACCC TGACCCTCTC GCATGAAGGC GACGGGCGGC GCGTAAACGT CACCGCTCCG
GAAGCTGCCT TCGATCGGAT CGTTCGTTCC CTTGCCATTC GAACGTTCCT CACCGGTGAA
GGCTACCCCG GCGTGCGGCG CCGTCACCTT AGCGGCGATG CTTCGATCCG CGCGTATGAA
CGCATCGATG GCAGGGACGG TGAGCCGGCG AAGATCCTGA TGGACGCGCC GAGACACAAG
CCGGGGCCGA TCCTTCAGAA CGGCAAGTAT TACCAGCAGC TCGCCCATAT CGCCGAGGAC
GTCGTTCCCT TCGTCGCAAT CTCGGCGTTT CTGCGGAAGC GCGGCTTCGC GGCACCGGCA
ATCTACGCGC GCGACCTTGA GCGGGGTCTG CTGCTCATCG AGGATCTGGG CTCCGAAGGC
ATTCTCGACG CGTATGGCCG TCCCGTCGCG GAGCGCTATC TGGAAAGCGT GCGCCTTCTC
GCACGACTCC ATGCAGAGCC GGCCGAGCGC GATGTAGAGA TCGGCGACGG CACCGTTCAT
CGCATCCCCG ATTTCGACCG GACGGCGATC AGGATCGAAA TAAGCCTTCT CATCGATTGG
TATCTCCCGT GGAGACGTGG ACGGCCCGCT TCCGAGGAGG AGCGGCAGGA GTATTTTGCC
GTCTGGGAGG GCCTGATCGA CGTTCTCGCT TCGGCGGAGA GGAACCTTCT TCTGCGCGAT
TTCCATTCGC CGAATATCAT CTGGCGCCCG GAAAAATCTG GCTTCGATCG CATTGGCATC
ATCGATTTCC AGGACGCGAT GATCGGGCCG ACGGCCTATG ATGTGGCTTC GCTGGTGCAG
GATGCGCGCG TGACCGTCGA GCCCGATCTC GCCAGGCGGA TGCTGACCGC CTACGCGGCA
GACCGCCGCG CTTCGGATTC TTTCGACGAA GCGGCCTTTC TGCGCGACTG GCATCTGATG
GCCGCCCAGC GCAATTGCAA GCTTGCCGGC CTGTGGGTTC GGCTCAAGGA GCGCGACGGA
AAGCCCGGCT ATATGAAGCA CATGCCGCGG ACCTTCGCCT ATCTCGAGCA CGCGCTCTCC
CATCAGGTGC TGACACCCTT GCGCGAATGG TGCATTAAGA CTGGAATCCT CGCTCCCGAA
TCAGCGAACC GTTAG
|
|---|
| Protein sequence | MKSLECLLTD EAATNEFGED LALALKAGDC VALSGDLGAG KSTFARAFIR AMADDEALEV
PSPTFTLVQS YDLRIPVAHF DLYRLADASE LDELGFDEAL TEGICLVEWP DRAEEALPAV
RITLTLSHEG DGRRVNVTAP EAAFDRIVRS LAIRTFLTGE GYPGVRRRHL SGDASIRAYE
RIDGRDGEPA KILMDAPRHK PGPILQNGKY YQQLAHIAED VVPFVAISAF LRKRGFAAPA
IYARDLERGL LLIEDLGSEG ILDAYGRPVA ERYLESVRLL ARLHAEPAER DVEIGDGTVH
RIPDFDRTAI RIEISLLIDW YLPWRRGRPA SEEERQEYFA VWEGLIDVLA SAERNLLLRD
FHSPNIIWRP EKSGFDRIGI IDFQDAMIGP TAYDVASLVQ DARVTVEPDL ARRMLTAYAA
DRRASDSFDE AAFLRDWHLM AAQRNCKLAG LWVRLKERDG KPGYMKHMPR TFAYLEHALS
HQVLTPLREW CIKTGILAPE SANR
|
|---|
| |