| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_3115 |
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| Symbol | |
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| ID | 5323994 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | - |
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| Start bp | 3261877 |
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| End bp | 3264957 |
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| Gene Length | 3081 bp |
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| Protein Length | 1026 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640792065 |
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| Product | helicase domain-containing protein |
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| Protein accession | YP_001328776 |
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| Protein GI | 150398309 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.186884 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGTCCTTTC AATCCATGAT CCTGAGCGGC CGCGGTGTAA CCGCGGTGCT CGGACCTACC
AATACCGGCA AGACCCATTA TGCTATCGAG CGCATGGTCG CGCATGACAG CGGCGTCATC
GGGCTGCCGC TGAGATTGCT CGCGCGTGAG GTCTATACGC GCCTGGTGGA GAAGGTCGGC
CATCATAATG TCGCGCTGAT AACGGGCGAG GAAAAGATCG CGCCCCACCG GGCCCGGTAC
TCGGTCTGCA CGGTGGAGGC GATGCCGCGC GAGACGACGG CCTCTTTCGT GGCGATCGAC
GAGGTCCAGC TCGCAGGCGA TCTCGAACGC GGTCACATCT TCACGGACAG GGTCCTGCAC
CTTCGCGGTC GCGGCGAGAC GCTGTTCCTC GGGGCTGCGA CGATGCGGCC CATTCTCGAA
TATCTTCTGC CCGGCATCAC CGTGGTCGAA CGGCCGCGTA TGTCGCAGCT CCTCTATGCC
GGATCCAAAA AGATCACGCG CCTGCCGAAC CGCTCCGCAA TCGTCGCCTT TTCGGCCGAC
GAGGTCTATG CGATAGCAGA GCTCATCCGG CGGCAGCGCG GCGGGGCGGC CGTCGTTCTG
GGCGCTCTTT CGCCGCGGAC CCGCAATGCC CAGGTGGCCC TCTACCAGGA GGGAGACGTC
GATTATCTCG TGGCAACCGA TGCGATCGGC ATGGGGCTGA ACCTCGACGT CGACCACGTG
GCCTTCGCCC AGGACCGGAA GTTCGACGGT TATCAATATC GCAACCTCAA TCCGGCGGAG
CTCGCGCAGG TGGCGGGGCG CGCGGGCAGG CACGTTCGGG ACGGGACGTT TGGCGTCACG
GGCCGCGTCG ACCCTTTCGA GGAGGAGCTT GTTCACCGGA TCGAATCGCA TGAGTTCGAC
CCCGTCCGGG TGCTGCAATG GCGCTCCAAG GCGCTGGATT ATTCTTCAGT GAAGGCGCTG
AAGAAAAGCC TGGAGGCGGC ACCGGCGGTC TCCGGGTTGG CGCGGGCGCT CCCGGCCGTC
GATCAGCAGG CTCTCGAGCA TCTGACGCGC TACCCGGAGA TCGTCGACGT AGCGACGACG
TCCGAGCGCG TGGAGAAGCT GTGGGAAGCC TGCGCACTCC CGGACTACCG CCGCATTACG
CCCGCCCAGC ATGCGGATCT GATCTCGAGT ATCTATGCCG ACCTCGTTCG CCATGGGACG
GTCAATGAGG ATTTCATGGC CGAACAGGTC CGGCGTGCCG ATCACACGGA CGGGGAAATC
GACACACTTT CGGCGCGAAT TGCGCAGATC AGGACCTGGA CCTATGTGTC CAATCGGCCC
GGGTGGCTTG CCGATCCGAC ACACTGGCAA GAAAAGACGC GGGAAATCGA AGATCGATTG
TCCGACGCGC TACATGAACG GTTGACGAAA CGCTTTGTTG ATCGCAGGAC ATCTGTGCTC
ATGAAGCGCC TGAGAGAGAA TGCGATGCTG GAAGCAGAAA TCAGTGTGAA TGGTGATGTC
TTCGTCGAGG GACACCATGT GGGTCAGCTA GCCGGTTTCC GGTTCACGCT CGTTGCGGGC
AGCGAGGGAA CGGACGCGAA GGCCGTGCAG GGCGCCGCCC AGAAGGCGCT CGCGCTGGAA
TTCGAAGCGC GCGCCGCCCG TCTCCACGCG GCCGGTAATG GCGATCTGGC CCTGTCGTCG
GACGGTCTCG TCCGTTGGCT CGGGGATCCG GTCGCGCGGC TCACGGCGAG CGACCATGTC
ATGCGTCCCC GGGTGATCCT GCTTGCCGAC GAGCAGCTCC AGGCCAATGC GCGCGAGCAT
GTACTCGCTC GGATCGAGCG CTTCGTAAAT CATCACATCA GCACGGTGCT GAAGCCGCTG
GACGATATCT CGCGCGCCGA GGACCTGGAG GGGCTTGCCA AAGGGCTTGC CTTCCAGCTC
GTCGAAAACC TCGGCGTGCT CTTCCGTCGC GACGTTGCAG AAGAGGTGAA GTCGCTCGAT
CAGGAGAGCC GTGCATCTAT CCGCAGATAC GGTGTTCGCT TCGGAGCCTA TCACATCTTC
CTCCCCGCGC TTTTGAAACC CGCTCCGGCG GAGCTGATCA CGCTGCTCTG GGCGCTGAAA
AACGATGGGC TCGACAAGCC GGGCTACGGC GACCTCATCC CGATGCTCGC TGCTGGGCGG
ACCTCCGTCG TCACCGACCC TTCCTTCGAG CGGACCTTCT ACAGGCTCGC GGGCTTCCGA
TTCCTCGGCA AGCGCGCGGT GCGCATCGAT ATACTCGAGC GGCTTGCCGA TCTCATCCGT
CCGCTTCTCC AGTGGAAGCC GGGGACGTCG CCGCGTCCCG AGGGCGCCTA TGACGGCCGC
CGTTTCGTGG CGACGACATC GATGCTGTCC ATACTCGGGG CAACGCCTGA CGACATGGAG
GAGATCCTCA AGGGGCTCGG CTATCGTGCC GATGCCGTGA CCGCCGAAGA GGCGGCCGCA
TTCCTGGCAA GTCAGAACGG CGCTACCCCG GCGGACACAC CTGCCGGAGA AGCCGCCGTG
AGCGAAACGG ATGCCGGGGC TCAACAGACC GGTGAACCGG CTGCAGAGGC CGAAGCGGCC
CGCATACCGC CAGCAGAGGC TGAGACGCGC GATGCACCGG CCGCGGAAGC GGAAGCGGCC
GATGCTGCGA CCAGCGGGCA GGAAGTCGCG CCGACCAGCG ACGAAACACC GGCGCCGGCC
GAGCCTGAGA CGCCGGCTGA ATCCAAGCCG GTGCTCCTGT GGCGGCCCGG CACGCGTCAG
GACAATCAGC GGCAAGGCGG TCGCCAAGGC GAACAGCGCC GCGGTGGACA GCGGCATGCC
CAGACCGAGG GACGCGAGGG CGGCCGCAGG CAGGGCGCCC AGGGCAAGCC GCCAGGCAAG
CCGAGGGAAG GCAAGCCTCA GGAGGGCAAG GGTTCGGAAG GAAGGCCGGG CGGACAGCGC
AAGGAGCGGG GCGACCGGTA CGATCGCAGC AAGCCGTCTC CCGCCAAGTT CGAGGGGCGC
CCGCCACGCA AGGAGAAGCC GATCGATCCG GATTCACCTT TCGCCAAGCT GGCTGCTCTG
AAGGAGCAGA TGAAGAAATA G
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| Protein sequence | MSFQSMILSG RGVTAVLGPT NTGKTHYAIE RMVAHDSGVI GLPLRLLARE VYTRLVEKVG
HHNVALITGE EKIAPHRARY SVCTVEAMPR ETTASFVAID EVQLAGDLER GHIFTDRVLH
LRGRGETLFL GAATMRPILE YLLPGITVVE RPRMSQLLYA GSKKITRLPN RSAIVAFSAD
EVYAIAELIR RQRGGAAVVL GALSPRTRNA QVALYQEGDV DYLVATDAIG MGLNLDVDHV
AFAQDRKFDG YQYRNLNPAE LAQVAGRAGR HVRDGTFGVT GRVDPFEEEL VHRIESHEFD
PVRVLQWRSK ALDYSSVKAL KKSLEAAPAV SGLARALPAV DQQALEHLTR YPEIVDVATT
SERVEKLWEA CALPDYRRIT PAQHADLISS IYADLVRHGT VNEDFMAEQV RRADHTDGEI
DTLSARIAQI RTWTYVSNRP GWLADPTHWQ EKTREIEDRL SDALHERLTK RFVDRRTSVL
MKRLRENAML EAEISVNGDV FVEGHHVGQL AGFRFTLVAG SEGTDAKAVQ GAAQKALALE
FEARAARLHA AGNGDLALSS DGLVRWLGDP VARLTASDHV MRPRVILLAD EQLQANAREH
VLARIERFVN HHISTVLKPL DDISRAEDLE GLAKGLAFQL VENLGVLFRR DVAEEVKSLD
QESRASIRRY GVRFGAYHIF LPALLKPAPA ELITLLWALK NDGLDKPGYG DLIPMLAAGR
TSVVTDPSFE RTFYRLAGFR FLGKRAVRID ILERLADLIR PLLQWKPGTS PRPEGAYDGR
RFVATTSMLS ILGATPDDME EILKGLGYRA DAVTAEEAAA FLASQNGATP ADTPAGEAAV
SETDAGAQQT GEPAAEAEAA RIPPAEAETR DAPAAEAEAA DAATSGQEVA PTSDETPAPA
EPETPAESKP VLLWRPGTRQ DNQRQGGRQG EQRRGGQRHA QTEGREGGRR QGAQGKPPGK
PREGKPQEGK GSEGRPGGQR KERGDRYDRS KPSPAKFEGR PPRKEKPIDP DSPFAKLAAL
KEQMKK
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