Gene Smed_3101 details

Gene Information

• Locus tag: Smed_3101
• Symbol: rplS
• ID: 5323980
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Sinorhizobium medicae WSM419
• Kingdom: Bacteria
• Replicon accession: NC_009636
• Strand: +
• Start bp: 3246849
• End bp: 3247382
• Gene Length: 534 bp
• Protein Length: 177 aa
• Translation table: 11
• GC content: 63%
• IMG OID: 640792051
• Product: 50S ribosomal protein L19
• Protein accession: YP_001328762
• Protein GI: 150398295
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0335] Ribosomal protein L19
• TIGRFAM ID: [TIGR01024] ribosomal protein L19, bacterial type

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 0.255374
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 26
• Fosmid unclonability p-value: 0.735203
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAACATCA TCCAGCAGCT GGAAGCCGAA CAGGCCGCCA AGATCGCCGC AAAGCGCACC 
CTTCCCGAAT TCTCCCCGGG CGATACTGTC CGCGTTAATG TGCGCGTTGT CGAAGGCACC 
CGCACCCGCG TACAGGCTTA CGAAGGCGTC TGCATCGCCC GCTCCGGAGG CGGCATCAAC 
GAGAGCTTCA CCGTTCGCAA GATTTCCTAC GGCGAAGGCG TCGAGCGCGT ATTCCCGGTT 
TATTCTCCGC TCGTCGAGAG CGTCGATGTG GTTCGCCGCG GTAAGGTCCG TCGCGCCAAG 
CTCTACTATC TGCGCGACCG CCGCGGCAAG TCGGCTCGTA TCGTCGAGAA CACCGGCACC 
CGCGCTCGCA AGCTGAACGA TGCCGAGCGC CAGGCCATTT CCGAGGAGAA GGCGCGCATC 
GAGGCTGAAA AGGTCGCAGC AGCCCAGGCT CTGGCCGCCG AAAAGGCAGC AGCCGAAGCT 
GCCGAGGCAA AGGCAGCAGA AGAAGCAAAG GCTGCAGAAG CCGCAGCGGA ATAA 

 

Protein sequence

MNIIQQLEAE QAAKIAAKRT LPEFSPGDTV RVNVRVVEGT RTRVQAYEGV CIARSGGGIN 
ESFTVRKISY GEGVERVFPV YSPLVESVDV VRRGKVRRAK LYYLRDRRGK SARIVENTGT 
RARKLNDAER QAISEEKARI EAEKVAAAQA LAAEKAAAEA AEAKAAEEAK AAEAAAE