| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_3083 |
|---|
| Symbol | |
|---|
| ID | 5323962 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | - |
|---|
| Start bp | 3229730 |
|---|
| End bp | 3232420 |
|---|
| Gene Length | 2691 bp |
|---|
| Protein Length | 896 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640792033 |
|---|
| Product | aconitate hydratase |
|---|
| Protein accession | YP_001328744 |
|---|
| Protein GI | 150398277 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1048] Aconitase A |
|---|
| TIGRFAM ID | [TIGR01341] aconitate hydratase 1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTCCAAAT CCCTAGACAG CTTCAATTGT CGCTCCACGC TCGCGGTCAA CGGTGTGGAC
TATATCTATT ACAGTCTACC CAAGGCCGAG GCGAACGGCC TCGCCGGCGT CTCGAAGCTT
CCCTATTCGA TGAAGGTCCT GCTGGAAAAC CTGTTGCGGA ACGAAGATGG ACGCTCGGTC
ACCAGGAAGG ACATCGAAAA CATTGCGGCA TGGCTGAACG ACAAGGGCAC GGCCGAAAAC
GAGATCGCCT ACCGCCCGGC ACGCGTGCTG ATGCAGGATT TCACCGGCGT TCCGGCCGTT
GTCGACCTCG CGGCCATGCG CGACGCGATG GTTTCGCTCG GCGGTGATCC GGAAAAGATC
AACCCGCTCG TTCCCGTCGA TCTCGTTATC GACCACTCGG TGATTGTCGA CGAATTCGGC
ACGCCGACCG CCTTTGCCCG CAATGTCGAG CTTGAATATC AGCGTAACGG CGAGCGCTAC
CGCTTCCTGA AATGGGGCCA GCAGGCCTTC CAGAATTTCC GCGTCGTGCC GCCCGGCACC
GGCATCTGTC ACCAGGTCAA TCTCGAATAT CTGGGCCAGG CCGTCTGGAC CAGGGAAGAA
GACGGCGAAA TCACCGCCTA TCCGGACACT TGCGTCGGCA CCGACAGCCA CACGACAATG
ATCAACGGTC TCGGCGTCCT CGGCTGGGGC GTGGGCGGCA TCGAAGCCGA AGCGGCGATG
CTCGGCCAGC CGGTCTCGAT GCTCCTGCCG GAGGTCATCG GTTTCAAGCT CACCGGAAAG
CTCAAGGAAG GCGTGACGGC GACCGACCTC GTGCTCACTG TGGTGCAAAT GCTGCGCAAG
AAGGGCGTCG TTTCGAAGTT CGTCGAATTC TTCGGCCCCG GCCTCGACAA CATGACGCTC
GCCGACCGTG CGACGATCGG CAATATGGGC CCGGAGTACG GCGCCACCTG CGGCTTCTTC
CCGGTCGATT CCGAGACGAT CAATTATCTC ACCATCTCCG GCCGTGAAGA GCAGCGCATC
GCGCTCGTCG AAGCCTATTC CAAGGCCCAA GGGATGTGGC GCGAAGGCGA CGGCTCCGAA
CTCGTCTTTA CCGACACTCT GGAACTCGAT CTCGGCGAGG TCGTGCCGTC GATGGCCGGT
CCGAAGCGCC CCGAGGGCCG TATCGCGCTC GAGAACATCG CCTCCGGCTT CGCGTCCTCG
CTCGACAACG ACTACAAAAA ACCGGGGCAG CTCGCGAACC GCTACGCGGT CGAGGGCACG
GACTACGATC TCGGCCATGG CGACGTCGCG ATCGCCGCCA TCACGTCCTG CACCAATACC
TCGAACCCGT CGGTCCTGAT CGCCGCCGGC CTGCTTGCCC GCAATGCGGT CGCCAAGGGC
CTGAAGACCA AGCCCTGGGT CAAGACGTCA CTGGCGCCCG GATCGCAGGT CGTCGCCGAA
TACCTGTCGA AATCCGGCCT GCAGACAGAT CTTGACAAGC TCGGCTTCAA TCTGGTCGGC
TTCGGCTGCA CCACCTGCAT CGGCAACTCC GGACCGCTGC CGGCGGAGAT CTCCAAGACG
ATCAACGACA AGGGCTTGAT CGCTGCCGGA GTCCTTTCCG GCAACCGCAA CTTCGAAGGC
CGCATCTCGC CGGATGTCCA GGCAAACTAT CTCGCTTCGC CGCCGCTCGT GGTCGCCTAC
GCACTTGCCG GTTCCGTCCA GAAGGATCTG ACGAAGGAGC CGCTCGGCGA GGACCGGAAC
GGGCAGCCGG TCTACCTCAA GGACATCTGG CCAACGTCCC AGGAAATCCA GGACTTCATC
TTCAAATACG TCACCCGCGA GCTTTACGCG ACGAAATACG CCGATGTGTT CAAGGGCGAC
GCAAATTGGC AGGCGGTTCA GGTTCCGGCC GGCCAGACCT ACGCCTGGGA CGAGGGGTCG
ACCTATGTCC AGAATCCGCC CTACTTCGTC GGCATGGGCA AGAAGGGGGC CGGCATCTCG
GACATAAAGG GTGCCCGCGT CCTCGGCCTG TTCGGCGACA AGATCACCAC CGACCACATC
TCGCCGGCCG GCTCGATCAA GGCGGCGTCG CCTGCGGGCG GCTATCTGCT CGAACATGGC
GTCGGGATTG CCGACTTCAA CCAGTACGGG ACGCGCCGCG GTAATCATGA AGTGATGATG
CGCGGCACCT TCGCCAATAT TCGCATCCGC AACCATATGC TCGGTCCGAA CGGCAAGGAA
GGCGGCTACA CGATCCACTA CCCCTCGAAG GAGGAAATGT CGATCTACGA CGCGGCCATG
CAGTACAAGG CAGAGGGCGT TCCGCTGGTC ATATTCGCCG GCGTCGAGTA CGGGAACGGC
TCTTCGCGCG ACTGGGCGGC GAAGGGCACC AACCTTCTCG GCGTCAAGGC CGTGATCGCG
CAGTCCTTCG AGCGTATCCA CCGTTCGAAC CTGGTCGGCA TGGGCGTCAT CCCATTCGTC
TTCGAGGAGG GCACCAACTG GGAGGCCCTC GGTCTCAAGG GGGACGAAGT GGTGACGATC
GAAAACCTCG CCAATGTTCA ACCGCGCGAG AAGCGCGTGG CGAAGATCAC CTATGGCGAC
GGCTCGGTGA AGGAGGTCCC GCTCATCTGC CGCATCGATA CGCTCGATGA GGTCACCTAC
GTCAACAATG GCGGCATCCT GCAGACGGTC CTACGCGATC TCGCCGCCTG A
|
|---|
| Protein sequence | MSKSLDSFNC RSTLAVNGVD YIYYSLPKAE ANGLAGVSKL PYSMKVLLEN LLRNEDGRSV
TRKDIENIAA WLNDKGTAEN EIAYRPARVL MQDFTGVPAV VDLAAMRDAM VSLGGDPEKI
NPLVPVDLVI DHSVIVDEFG TPTAFARNVE LEYQRNGERY RFLKWGQQAF QNFRVVPPGT
GICHQVNLEY LGQAVWTREE DGEITAYPDT CVGTDSHTTM INGLGVLGWG VGGIEAEAAM
LGQPVSMLLP EVIGFKLTGK LKEGVTATDL VLTVVQMLRK KGVVSKFVEF FGPGLDNMTL
ADRATIGNMG PEYGATCGFF PVDSETINYL TISGREEQRI ALVEAYSKAQ GMWREGDGSE
LVFTDTLELD LGEVVPSMAG PKRPEGRIAL ENIASGFASS LDNDYKKPGQ LANRYAVEGT
DYDLGHGDVA IAAITSCTNT SNPSVLIAAG LLARNAVAKG LKTKPWVKTS LAPGSQVVAE
YLSKSGLQTD LDKLGFNLVG FGCTTCIGNS GPLPAEISKT INDKGLIAAG VLSGNRNFEG
RISPDVQANY LASPPLVVAY ALAGSVQKDL TKEPLGEDRN GQPVYLKDIW PTSQEIQDFI
FKYVTRELYA TKYADVFKGD ANWQAVQVPA GQTYAWDEGS TYVQNPPYFV GMGKKGAGIS
DIKGARVLGL FGDKITTDHI SPAGSIKAAS PAGGYLLEHG VGIADFNQYG TRRGNHEVMM
RGTFANIRIR NHMLGPNGKE GGYTIHYPSK EEMSIYDAAM QYKAEGVPLV IFAGVEYGNG
SSRDWAAKGT NLLGVKAVIA QSFERIHRSN LVGMGVIPFV FEEGTNWEAL GLKGDEVVTI
ENLANVQPRE KRVAKITYGD GSVKEVPLIC RIDTLDEVTY VNNGGILQTV LRDLAA
|
|---|
| |