| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_2643 |
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| Symbol | |
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| ID | 5323512 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | - |
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| Start bp | 2744253 |
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| End bp | 2747429 |
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| Gene Length | 3177 bp |
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| Protein Length | 1058 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640791587 |
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| Product | hydrophobe/amphiphile efflux-1 (HAE1) family protein |
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| Protein accession | YP_001328308 |
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| Protein GI | 150397841 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGGTTCG CTCATTTCTT TGTCGACAGA CCGATCTTTG CGTCGGTGCT CTCGATCGTC
CTGTTGATCG TCGGCAGCAT CGCCTATTTC CAGCTTCCGA TCGCGCAGTA TCCGGAGATC
GCACCGCCCA CCATCGTCGT GCGCGCCTCC TATCCGGGCG CGGATGCCGA GACCGTGGCC
AATACGGTCG CCACCCCGCT CGAGCAGGAG ATCAACGGCG TCGAGAACAT GCTCTACATG
TCGTCCTACG CCACAGCCGA CGGTTCGATG GCGCTGACGA TCACCTTCAA GCTCGGGACC
GATCTCGATC AGGCGCAAGT ACTTGTTCAG AACCGCGTCT CTATCGCAGA GCCCCGGCTT
CCCGAGGAAG TCCGGCGTAT CGGCGTCACC ACCACGAAAA GCTCGCCCGA CCTGATGATG
GTCGTTCACC TGCTTTCCCC GAACGACCGT TACGACCAGC TCTACGTCTC AAACTACGCC
CGATCGCGTA TCCGCGACAT TCTCGTCCGG CTGGACGGTG TCGGAGACGT CCTTCTGTTC
GGCGAACGCG AATACGCTCT GCGCGTCTGG CTCGACCCGC AAAAGCTCTC CGCCTACGGC
ATGACCGCAG GCGACGTGGT CGAGGCGCTG CGCCAGCAGA ACGTCCAGGT CTCGGGTGGC
TCGATCGGCG GTCCGCCGAT GTCGAGCGAC AGCGCCTTTC AGTATACGGT CACCACCGAC
GGCCGATTCG GCGATGCCCG GCAGTTTCGT TACGTCATCG TCAAGGCGAC CGACGAGGGC
AGGCTCGTCC AGTTGCAGGA CGTCGCCCGT ATCGAGCTCG GCGCGCGCGA ATACGTCACC
AACAGTTATC TGAACGGCAG CCCGGCCGTC GCGCTCGGCA TCTTCTCACG TCCCGGCAGC
AACGCGCTTG CCGCGGCCGA TGCGATCCAG GCGACGATGG CTGATCTTTC GAGAGACTTT
CCCGAGGGGC TTGAATACAG GATCATCTAC AACCCGACGG AGTTCATCTC GGAATCCATC
AACGAAGTCT ACAAGACCAT TGCTGAAGCC GCGCTTCTCG TGGCTCTCGT CGTGATCATA
TTCCTGCAGT CGTGGCGAAC GGCGATCATT CCCATCGTCG CCATCCCCGT TTCGCTCGTC
GGCACCTTCG CACTGCTTTT CGCCTTCGGC TTCTCGCTCA ACATGCTGAC GCTCTTCGGC
CTTGTGCTCG CGATCGGCAT CGTGGTCGAC GACGCGATCG TCGTTGTCGA GAACGTCGAG
CGCAACCTCG CGAAAGGGCT TTCGCCCCGA GAGGCGGCCC ATGTGACGAT GGACGAGGTG
GGCGCCGCCG TCATAGCGAT TTCGCTCGTC CTGACTGCGG TGTTCGTACC GACCGCGTTC
ATTCCCGGCA TTTCCGGGCA GTTCTATCTG CAATTCGCAG TGACCATCGC AGTGGCGACG
GTGATTTCCG CGATCAACTC CCTGACGCTC TCACCGGCGC TTGCCGCAAT CCTGCTGCGG
CCGCACGAGA ACCACGGACA TGAGAGCCGT AATCCGTTAA CGCGGCTCGG CCGTGGCTTT
GCCAACGGCT TCAACCGCGG CTTCGACCGC ATGGCCGATG GCTATGCATG GACGGTGCGC
CACCTCGTCA CGACGCGGAT CGCGCTTGCC GGGTCGCTCG TCGTCTTCGT CGCCCTGCTT
GGAGCGACCT GGTACATGGC GCAGATCGTG CCACGCGGCT TCATACCCAC GATGGATCAG
GGCTACGCCA TCGTCGTCAT ACAGCTTCCT GACGGCGCGT CGCTCGAGCG CACCGATAAG
GTCGTTCGCC GGGCCTCGGA GATCATCCGC GAGGTTCCGG GGGTCAAGGA TGCGGTCGCC
TTTGCCGGCT TCAACGGCGC AACCTTCACC AATGCCTCCA ATTCCGGCGT GATTTTCACG
CCTTTCAACA GTTTCGAAGA GCGTCTCGAG CGAAAACAGA GTTCCGAACA GATCATCGGC
CAGATATTCG GTGCCATGCA GGGCATCCAG GAGGCTTTCA TCATTGCCGT TCCTCCGCCG
TCCGTGCGAG GCATCGGCAA TTCCGGCGGT TTCAAGATGC AGATCATGGA CCGCCAGAGC
GCCGATATGC GCCGCGCGCT CGGCCTCGCC CATCAGATGA TGGGAGCCGC CAACCAGACC
GAAGGGCTGA CCGGCGTCTT CACCACCTTC TCGGCATCCA GTCCGCAATT CTTCCTGGCG
ATCGACCGCG ACAAGGCCCG GGCTCTGAAC GTGCCGATTC CCAATATCTT CGAGACGCTC
TCGATCAATC TGGGGACGTC CTACGTCAAC GACTTCAATG CCTTCGGCCG TGTCTACCAG
GTCCGTGCCC AGGCCGACCA GCAATTCCGG CTGGAACGGG AAGACATACT CGCGTTGAAG
GTACGCTCCG CCACGGGCGC TCTGGTGCCG CTCGGCACCC TGGTCGAGAT CCGCGACACG
AGCGGACCGG CGCTCGTCCA GCGCTACAAC ATGTATGTGT CCGTACCGCT ACAGGGCAAT
CCAGCGCCGG GCGTCTCGAC GGGCGACGCT CTCGATAAGA TGGAAGCCCT TGCGGGCCAG
ATCCTGCCGC AGGGTACGAC TTTCGAATGG ACGGAACTCG CCCTGCAGGA GCGCCAGACC
GGCAACACGG CGGTCTTCAT CTTCGCGCTT TCGGTGGTCT TCGTCTTCCT CGCCCTCTCG
GCGCAATATG AGAGCTGGGT GTTGCCGCTG GCCATCATCC TGATCGTGCC GCTTGCCGTT
CTCGCAGCAC TCCTTGGCGT CTCGATCCGG GGTTTCGACA ATAACGTGCT TACTCAGATC
GGGCTCATCG TCCTCATCGG ACTCGCGGCG AAGAACGCGA TCCTGATCGT CGAGTTCGCG
CGCCAGGGCG AAGAGGAGGG CAAGACGCCG GTCGAGGCGG CAATCGATGC AAGCCGGCTT
CGGCTGCGTC CGATCCTGAT GACTGCTTTC GCCTTCATCC TCGGCGTCGT GCCGCTGGTC
ATCGCCACGG GACCCGGCGC CGAAATGCGC CAGTCGCTCG GTACCGCGGT CTTCTCCGGC
ATGCTCGGGG TTACCTTCCT GGGCCTGTTC CTGACGCCGG TCTTCTACGT GGCACTGCGT
TCGCTGCGCC GGAAGCGCGC TCCGGCGGCC GAAGCCGTGC CGGCGCCGGG CGAATGA
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| Protein sequence | MRFAHFFVDR PIFASVLSIV LLIVGSIAYF QLPIAQYPEI APPTIVVRAS YPGADAETVA
NTVATPLEQE INGVENMLYM SSYATADGSM ALTITFKLGT DLDQAQVLVQ NRVSIAEPRL
PEEVRRIGVT TTKSSPDLMM VVHLLSPNDR YDQLYVSNYA RSRIRDILVR LDGVGDVLLF
GEREYALRVW LDPQKLSAYG MTAGDVVEAL RQQNVQVSGG SIGGPPMSSD SAFQYTVTTD
GRFGDARQFR YVIVKATDEG RLVQLQDVAR IELGAREYVT NSYLNGSPAV ALGIFSRPGS
NALAAADAIQ ATMADLSRDF PEGLEYRIIY NPTEFISESI NEVYKTIAEA ALLVALVVII
FLQSWRTAII PIVAIPVSLV GTFALLFAFG FSLNMLTLFG LVLAIGIVVD DAIVVVENVE
RNLAKGLSPR EAAHVTMDEV GAAVIAISLV LTAVFVPTAF IPGISGQFYL QFAVTIAVAT
VISAINSLTL SPALAAILLR PHENHGHESR NPLTRLGRGF ANGFNRGFDR MADGYAWTVR
HLVTTRIALA GSLVVFVALL GATWYMAQIV PRGFIPTMDQ GYAIVVIQLP DGASLERTDK
VVRRASEIIR EVPGVKDAVA FAGFNGATFT NASNSGVIFT PFNSFEERLE RKQSSEQIIG
QIFGAMQGIQ EAFIIAVPPP SVRGIGNSGG FKMQIMDRQS ADMRRALGLA HQMMGAANQT
EGLTGVFTTF SASSPQFFLA IDRDKARALN VPIPNIFETL SINLGTSYVN DFNAFGRVYQ
VRAQADQQFR LEREDILALK VRSATGALVP LGTLVEIRDT SGPALVQRYN MYVSVPLQGN
PAPGVSTGDA LDKMEALAGQ ILPQGTTFEW TELALQERQT GNTAVFIFAL SVVFVFLALS
AQYESWVLPL AIILIVPLAV LAALLGVSIR GFDNNVLTQI GLIVLIGLAA KNAILIVEFA
RQGEEEGKTP VEAAIDASRL RLRPILMTAF AFILGVVPLV IATGPGAEMR QSLGTAVFSG
MLGVTFLGLF LTPVFYVALR SLRRKRAPAA EAVPAPGE
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