| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_2538 |
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| Symbol | |
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| ID | 5323406 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | + |
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| Start bp | 2635429 |
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| End bp | 2636697 |
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| Gene Length | 1269 bp |
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| Protein Length | 422 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640791481 |
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| Product | diaminopimelate decarboxylase |
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| Protein accession | YP_001328203 |
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| Protein GI | 150397736 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0019] Diaminopimelate decarboxylase |
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| TIGRFAM ID | [TIGR01048] diaminopimelate decarboxylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0787755 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.617657 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAACCATT TTCAATACCG CGACGGAATT CTTTACGCCG AAGACGTGCC TTTGACGGAA
ATCGCGCGTG CCGTCGGGAC GCCGTTCTAT TGTTACTCCA CCGCCACGCT GGAGCGTCAT
TACAAGGTAT TCTCGCAAGC CTTCGCCGAT GTGGACGCGA TGGTCTGCTA CGCAATGAAG
GCCAATTCGA ACCAGGCCGT GCTGAAAACG CTTGGCCGGC TCGGCGCCGG CCTCGACGTC
GTGTCCGAGG GTGAGCTGCG CCGCGCGCTT GCAGCGGGCA TTCCGCCGAG CCGGATCATG
TTCTCCGGCG TCGGCAAGAC GGCGCGCGAG ATGGATTTCG CTCTGGAGGC CGGCATCTAT
TGCTTCAACG TCGAATCCGA GCCCGAACTG GAGGTTCTGA ACCAAAGGGG CGTGCGCGCC
GGCAAGAGGG CGCCAGTTTC CTTCCGTATC AATCCCGATG TCGATGCTCG CACCCACGCG
AAGATCTCGA CCGGCAAAAA GGAGAACAAG TTCGGAATTT CCTGGGAGCG GGCACGCAGC
GTCTACGCCC ACGCCGCAAC GCTTCCCGGT ATCGAGGTGA CCGGCATCGA CATGCATATC
GGCAGCCAGA TCACCGAACT GCAGCCCTTC GACGACGCCT TCAAGCTTTT GCGCGAGCTG
GTCGATACTC TGCGTTCCGA CGGGCATGTC ATCGAACATG TCGATCTCGG CGGCGGCCTC
GGCATTCCGT ACCGGGAAGA TAACAACCCA CCGCCGCTGC CGGACGCCTA TGCAGATGTC
GTCAAGAACC AGCTCAAAGG TCTCGACTGC AAGATCGTCA CCGAACCCGG CCGGCTGATC
GTCGGCAATG CCGGCATCCT CGTGACCGAA GTGGTCTATG TAAAGGACGG CGGCGACAAG
ACTTTCGTCA TCGTGGATGG TGCGATGAAC GACCTCATCC GCCCAACGCT CTATGAGGCC
TATCACGAGA TTCGGCCGGT GCGGATCTCC GCAGCCAGTG CGCCGCGCAT CAAAGCCGAC
GTCGTCGGTC CGGTCTGCGA GACCGGCGAC TATCTGGCCC TCGACCGGGA AATGGCGATG
CCGAGGGCGG GCGATCTTCT CGCGATCGGC TCGGCGGGAG CGTACGGTGC CGTTCAGGCG
GGAACGTATA ACAGCCGCCT GCTGGTGCCC GAGGTGCTGG TCAAGGGCGA TCGTTTCCAC
GTGATCCGTC CGCGCAAGGA CTATGACGAA CTGATCGGCC TCGACTCGGT GCCGGACTGG
CTCGATTGA
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| Protein sequence | MNHFQYRDGI LYAEDVPLTE IARAVGTPFY CYSTATLERH YKVFSQAFAD VDAMVCYAMK
ANSNQAVLKT LGRLGAGLDV VSEGELRRAL AAGIPPSRIM FSGVGKTARE MDFALEAGIY
CFNVESEPEL EVLNQRGVRA GKRAPVSFRI NPDVDARTHA KISTGKKENK FGISWERARS
VYAHAATLPG IEVTGIDMHI GSQITELQPF DDAFKLLREL VDTLRSDGHV IEHVDLGGGL
GIPYREDNNP PPLPDAYADV VKNQLKGLDC KIVTEPGRLI VGNAGILVTE VVYVKDGGDK
TFVIVDGAMN DLIRPTLYEA YHEIRPVRIS AASAPRIKAD VVGPVCETGD YLALDREMAM
PRAGDLLAIG SAGAYGAVQA GTYNSRLLVP EVLVKGDRFH VIRPRKDYDE LIGLDSVPDW
LD
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