Gene Smed_2419 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_2419 
Symbol 
ID5323280 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp2496897 
End bp2498069 
Gene Length1173 bp 
Protein Length390 aa 
Translation table11 
GC content63% 
IMG OID640791357 
Producthypothetical protein 
Protein accessionYP_001328086 
Protein GI150397619 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0626] Cystathionine beta-lyases/cystathionine gamma-synthases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.337062 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCAACG GTCTCGATCC GTTCGAGAGA GCCTCCCTGA TTGTCGCGCA TGACGAGAGC 
AACGCTTTCG ATGCCGTCGT TCCCCCGATC GTCCAGACCT CGCTCTTCAC CTTCAAGGAT
TATGACGAGA TGCTCTCCTC CTATCGAGGC GAGCGCGTGC GGCCGATCTA CACCCGCGGC
CTCAATCCGA CGGTCAGGCA TTTCGAGGAG ATGCTGGCAA AGCTCGAAGG CGCCGAGGAT
GCGATCGGCT TCGCCAGCGG CATGTCGGCG ATCTCATCGA GCGTCCTCTC CTTCGTGGAG
CCGGGCGACC GCATCGTCTC CGTGAAGCAT GTGTATCCCG ATGCGTTCCG CCTCTTCGGC
ACCCATCTGA AGCGCATGCG CATCGAAGTC ACCTATGTCG ACGGACGAGA CGAGGAGGCG
GTGGCGAGAG CACTTCCCGG CGCCAGGCTC TTCTACATGG AAAGCCCGAC CAGCTGGGTC
ATGGACACGC ATGATGTCGC ATCGCTTGCG GCTCTTGCAC GAGAGCAAGG GATCGTCACG
GTCATCGACA ACAGCTGGGC GAGCCCGGTA TTTCAGCAGC CGATCTCGCT TGGCGTCGAC
CTCGTCATTC ACTCGGCCTC GAAATATCTG AGCGGCCATA GCGATGTCGT CGCCGGGGTG
GTCGCCGGGT CGAGCGCGTT GATCGGCCGC ATCCGTTCGG AAGCCTATCC CTATCTCGGT
GGCAAGCTTT CACCATTCGA TGCCTGGCTC CTGATCCGCG GCTTGCGCAC CCTGCCGATC
CGGATGAAGG CACATGAGCG CTCGGCGCTT GCAGTCGCCC GTCGCCTGGC GGAGCATCCG
CTGGTCGAAA CCGTTTGCCA TCCCGGCCTC GGCAATCATC TTCCGCCGGG TCTCTCCGGC
ACCTCCGGCC TCTTCTCCTT CATCTTCCGC GAAGGCGTCG ACGTGCGGCG CTTCGCCGAT
CATCTGAAAC TGTTCAAGCT CGGCGTCTCC TGGGGCGGCC ACGAAAGCCT GATCGTGCCG
GGCGAAATCG TCCTCCGACA GAAAGCCGAG CCCAATTCCG CGGCAGCCTT CGGCATTTCA
CCGCGGTCGG TACGGCTCCA TGTCGGCCTG GAGGGAACGG AGGCCCTCTG GAGCGACCTC
GAAGCGGCGA TGACAGCCGC TTCATCAGGC TGA
 
Protein sequence
MSNGLDPFER ASLIVAHDES NAFDAVVPPI VQTSLFTFKD YDEMLSSYRG ERVRPIYTRG 
LNPTVRHFEE MLAKLEGAED AIGFASGMSA ISSSVLSFVE PGDRIVSVKH VYPDAFRLFG
THLKRMRIEV TYVDGRDEEA VARALPGARL FYMESPTSWV MDTHDVASLA ALAREQGIVT
VIDNSWASPV FQQPISLGVD LVIHSASKYL SGHSDVVAGV VAGSSALIGR IRSEAYPYLG
GKLSPFDAWL LIRGLRTLPI RMKAHERSAL AVARRLAEHP LVETVCHPGL GNHLPPGLSG
TSGLFSFIFR EGVDVRRFAD HLKLFKLGVS WGGHESLIVP GEIVLRQKAE PNSAAAFGIS
PRSVRLHVGL EGTEALWSDL EAAMTAASSG