Gene Smed_2356 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_2356 
Symbol 
ID5323217 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp2431813 
End bp2432643 
Gene Length831 bp 
Protein Length276 aa 
Translation table11 
GC content59% 
IMG OID640791294 
Productbinding-protein-dependent transport systems inner membrane component 
Protein accessionYP_001328023 
Protein GI150397556 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0395] ABC-type sugar transport system, permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCACGCA ATGTTTCCAC CGGGCGGAAG CTCATTACCA CCGTGGTGGC CTGGACGATC 
GGAATCCTCA TCTTTTTCCC GATCCTCTGG ACATTCCTGA CGAGCTTCAA GACGGAAGCC
CAGGCGATTG CTTCGCCGCC GGTCTTCCTC TTCTTCGACT GGACGACCGA AAACTATGCC
GAGGTGCAGA GCCGGTCGGA CTATCTGAAG CACTTCATGA ATTCGGTGAT CGTTTCCTTC
GGCTCGACGC TGCTGGGCCT GCTGATCGCG ATCCCCTCGG CCTGGGCGAT GGCATTCTCG
CCGACGAAGC GCACCAAGGA CGTGCTGATG TGGATGCTCT CCACAAAGAT GATGCCGCCC
GTCGGCGTGC TGGTGCCGAT GTATCTGATA TTCCGCAACT GGGGCCTGCT CGACACACGG
ACGGGATTGG TGATCGTGCT GACGCTGATC AATCTGCCGA TCATCATCTG GATGCTCTAC
ACCTATTTCA AGGAGATTCC GGGAGAAATC CTCGAAGCGG CGCGTATGGA CGGCGCATCG
CTCTCCAAGG AGATCATCTA TGTGCTGACG CCGATGGCGA TCCCGGGGAT CGCCTCGACG
CTGCTCCTCA ACATCATCCT TGCCTGGAAC GAGGCGTTCT GGACCCTGAA CCTGAGTGCT
GCGAAGGCGG CACCGCTCAC CGCCTTCATC GCCTCCTATT CGAGCCCTGA AGGACTCTTC
TATGCGAAGC TCTCGGCGGC CTCGACGATG GCGATCGCCC CCATCCTCAT TCTCGGCTGG
TTCTCGCAAA AACAGCTCGT ACGCGGTCTC ACTTTCGGCG CGGTCAAATA G
 
Protein sequence
MARNVSTGRK LITTVVAWTI GILIFFPILW TFLTSFKTEA QAIASPPVFL FFDWTTENYA 
EVQSRSDYLK HFMNSVIVSF GSTLLGLLIA IPSAWAMAFS PTKRTKDVLM WMLSTKMMPP
VGVLVPMYLI FRNWGLLDTR TGLVIVLTLI NLPIIIWMLY TYFKEIPGEI LEAARMDGAS
LSKEIIYVLT PMAIPGIAST LLLNIILAWN EAFWTLNLSA AKAAPLTAFI ASYSSPEGLF
YAKLSAASTM AIAPILILGW FSQKQLVRGL TFGAVK