Gene Smed_2221 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_2221 
Symbol 
ID5323082 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp2298358 
End bp2298927 
Gene Length570 bp 
Protein Length189 aa 
Translation table11 
GC content62% 
IMG OID640791159 
Productputative transmembrane protein 
Protein accessionYP_001327888 
Protein GI150397421 
COG category[S] Function unknown 
COG ID[COG4764] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.860046 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.348957 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGTTGCG TTTTTGTCGT CGTCCTCCTG TTGTTGGCCG GCTGCGGAAC GGTGCCGAGA 
GAGACCCGGA ACGCCTGTGC GGTTTTCGAG CAGCGAGACA ATCTTTTCAA CAATTGGCGC
CGGGCTGCCT ATGCGGCAGA GCGTGAATAT GGCGTGCCCG TTCCGGTGCT GATGGCGACG
GTCTATACGG AGTCCGGCTT CCGCCATAAT GCCAAGCCGC CGCGGACGAA ACTCCTCGGC
TTCATTCCGT GGACAAGGAT TTCCTCGGCC TATGGATATT CGCAGGCGCT TGACGGCACC
TGGGCGCGAT ATCAGGCAGA AACGGGCCGA TGGACGGCAC GCCGGTCGGA TTTCGGGGAC
GCGATCCGCT TTATCGCCTG GTACCACAAT CAGAGCCACA AGCGGAACGG CATTGCCCTG
AACGACACGT ACAGACTCTA TATCGCCTAT TACCACGGCC ACAGCGGTTA TGCCCGCGGC
AACTGGAGCG CCACGGCGAA GGCGGGCGCC AAACGGGCGT CCGGCATGGC CGCTGTCTAC
GCGCGCCAAT TGCGCGGCTG CAATTCGTGA
 
Protein sequence
MRCVFVVVLL LLAGCGTVPR ETRNACAVFE QRDNLFNNWR RAAYAAEREY GVPVPVLMAT 
VYTESGFRHN AKPPRTKLLG FIPWTRISSA YGYSQALDGT WARYQAETGR WTARRSDFGD
AIRFIAWYHN QSHKRNGIAL NDTYRLYIAY YHGHSGYARG NWSATAKAGA KRASGMAAVY
ARQLRGCNS