Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_2122 |
Symbol | |
ID | 5322982 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | + |
Start bp | 2186879 |
End bp | 2187811 |
Gene Length | 933 bp |
Protein Length | 310 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640791060 |
Product | transposase IS116/IS110/IS902 family protein |
Protein accession | YP_001327790 |
Protein GI | 150397323 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG3547] Transposase and inactivated derivatives |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.382641 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 0.260587 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATACATC CTGATGTCAT CGGATGCGAT ATTGCAAAAG CGCATCTAGA TTTTTTCGAC AGCGGCCTTG AGCGCCATTT CCGTATCGAC AACACTCCGG CCGCAATTTC CGCGTGGCTC GACGGCCTTG ATGGCAGAGG CGTTCATATC GTCTTTGAGG CGACCGGGCG TTACGATCGG CAGTTGCGCA TAGCCCTGGA GACCCGGGAG TTGCCCTATT CCCGCGTCAA TCCTGCCCGC GCCCGCGACT TTGCCAAGGC GATCGGCCTT CTTGCCAAGA CGGATGCGAT CGATGCACGT CTGCTTGCCC GGATGGGTCA AAGCCTGCCA CTCTCAACTC AGGCGCCTGA CGATCCCGCC CGCCACGTGC TCGCCCGCCT TCACACGCGG CGTGACCAGC TCGTGGCCAT GCGCCAGCAA GAGCGGACAC GCCTTCATGA GACCGAGGGG ATCGAGCGTG ACAGTGCTGA AAGCCATATG GCTTGGCTCG ACGCGGAGGT TGCGCGCATC GAAATGGCAT GCCGTGATGT TCTGAAGGCC GAGAAGACCT TGCAAGAACA AGAGGCAAGG CTGCGTTCCA TTCCCGGCAT CGGCCCCGTG GCCGCATTGA CCCTGATCGC GCATATGCCA GAACTCGGCA ATCGTTCGGC CAAGGCGATT GCAGCCCTTG CCGGTCTTGC GCCCTTCAAT GTCGACAGCG GCACGTCACG GGGAAAGCGG CATATACGCG GCGGTCGCAA GCGGATACGT GACGCGCTCT ACATGGCGGC GCTCACAGCC AGCCGTATGC TCCGTGCTTT TAAGTCCCAT GCTGACCAAA TGAAGGAGGC AGGCAAGCCC TTCAAGGTCG TCATCATTGC GCTTGCCCGC AAATTGCTCG CCATCGCAAA CGCCATCATC AGGGACAAAA CAACCTTCCG ACGAACCACC TGA
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Protein sequence | MIHPDVIGCD IAKAHLDFFD SGLERHFRID NTPAAISAWL DGLDGRGVHI VFEATGRYDR QLRIALETRE LPYSRVNPAR ARDFAKAIGL LAKTDAIDAR LLARMGQSLP LSTQAPDDPA RHVLARLHTR RDQLVAMRQQ ERTRLHETEG IERDSAESHM AWLDAEVARI EMACRDVLKA EKTLQEQEAR LRSIPGIGPV AALTLIAHMP ELGNRSAKAI AALAGLAPFN VDSGTSRGKR HIRGGRKRIR DALYMAALTA SRMLRAFKSH ADQMKEAGKP FKVVIIALAR KLLAIANAII RDKTTFRRTT
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