Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_2086 |
Symbol | |
ID | 5322945 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | - |
Start bp | 2143909 |
End bp | 2145342 |
Gene Length | 1434 bp |
Protein Length | 477 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640791023 |
Product | UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase |
Protein accession | YP_001327754 |
Protein GI | 150397287 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0770] UDP-N-acetylmuramyl pentapeptide synthase |
TIGRFAM ID | [TIGR01143] UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.00119682 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | TTGAACTGGC TCTGGACAAG CAGCGATCTT CTGGGCGCGA TGAACGGCCG TCCCGTCGGG AACCTGCCGG AAGGGATCAC CGGCATTTCG ATCGACAGCC GGACAATCGG CAATGGCGAG GCTTTTTTCG CGATCAGGGG CGATCGCGTC GACGGCCATG ACTATGCGGG GATCGCCCTT GCTAACGGAG CAGCGCTTCT TGTCGTCAGC GAAGCGAAGC TGCCGGCGCT CGGGCGCCTG ATCGCCCCGA TGATCGTCGT GGACGACGTG CTGGAGGCAA TGATCCGGCT GGGTTGCGCG GCACGCGACC GAAGCGCCGC AAAGATCATT GCCGTTACCG GATCGGTCGG CAAGACCACG ACGAAAGAGA TGTTGAGGCA CATGCTTTCG CCGCTGGGTC GGGTCCACGC CTCCGTCGCA TCCTTCAACA ATCACTGGGG CGTGCCCCTG ACGCTTGCCC GAATGCCGGA GACGACCGAT TACGGCGTCT TTGAGATCGG GATGAACCAT GCCGGCGAAA TTCGGCCGCT GACACGGATG GTTCGTCCGC ATGTGGCGGT CGTGACCAGC ATTGCTGCCG CCCATCTCGG GAATTTTGCG AGTCTGGACG ACATCGCCGC GGCCAAGGCT GAGATCTTCG AGGGGGTCGT CAACGGCGGC CATGCGGTGA TCAACAGGGA CAGTGCTCAA TACGAACTGC TGGAGAAGGC CGCCGCGACA GCCGGGGTCA GCCATGTCCA TTTCTTCGGC GCCAATCCAA AATCGGAATT CCGCCTGGCC GAGTTCGCCG GTGGTGCGGA AGGTTCGGTG CTGTGGGCGG GTGTCGGAGG CAGAACGCTT GAAATCGCGA TTGGCGCACC GGGGCGCCAT ATCGCCGAGA ACGCTCTGGC GGCGATCGCC GCAGCGACAC TGGCAGGCGC GGACACAGAT CGCGTCGCCG CATCGCTTGC AACCATGCAG CCGGAAAAGG GCAGGGGATT GCGGCACCGT CTCAGGATGG GTGCCGGCTA CATGACGCTG ATCGACGAGA GCTATAACGC CAACCCGGCT TCAATGCGGG CGGCGATCAC GCTGCTCCGC GATGCCGAGC CCTCGCCCGG CGGCCGGCGC ATCGCCATTC TTGGCGACAT GCTGGAAATG GGCGAGCATT CGGCGGCGGT TCATGCGGCA CTTGCGAGAC CCATTGTCGA TGCGGGTATC GCCGACGTCT GGCTGACGGG GACCGAGATG GCACATTTGC GCGATGCCCT GCCGTCGGAG GTGTCCGTCG TCCATCGCGA TCTGGTGAGC GACCTGACGG CCTACGCTCT CGGCGCAGTT GCAGCCGGCG ACGTGGTGAT GGTCAAGTCT TCGAAAAGCA CCGGTTGCGC AAAGATCGTC CAGGCGCTTC TCGATGCCCA TCCGCATGAC GAGGCCGGAA AAAGGGAAGC ATAG
|
Protein sequence | MNWLWTSSDL LGAMNGRPVG NLPEGITGIS IDSRTIGNGE AFFAIRGDRV DGHDYAGIAL ANGAALLVVS EAKLPALGRL IAPMIVVDDV LEAMIRLGCA ARDRSAAKII AVTGSVGKTT TKEMLRHMLS PLGRVHASVA SFNNHWGVPL TLARMPETTD YGVFEIGMNH AGEIRPLTRM VRPHVAVVTS IAAAHLGNFA SLDDIAAAKA EIFEGVVNGG HAVINRDSAQ YELLEKAAAT AGVSHVHFFG ANPKSEFRLA EFAGGAEGSV LWAGVGGRTL EIAIGAPGRH IAENALAAIA AATLAGADTD RVAASLATMQ PEKGRGLRHR LRMGAGYMTL IDESYNANPA SMRAAITLLR DAEPSPGGRR IAILGDMLEM GEHSAAVHAA LARPIVDAGI ADVWLTGTEM AHLRDALPSE VSVVHRDLVS DLTAYALGAV AAGDVVMVKS SKSTGCAKIV QALLDAHPHD EAGKREA
|
| |