| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_1941 |
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| Symbol | |
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| ID | 5322800 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | - |
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| Start bp | 1992834 |
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| End bp | 1993973 |
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| Gene Length | 1140 bp |
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| Protein Length | 379 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640790879 |
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| Product | TRAP dicarboxylate transporter- DctP subunit |
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| Protein accession | YP_001327610 |
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| Protein GI | 150397143 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG4663] TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.49323 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.352115 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACACA AAGCCGAGAT CGGGGAATCG TCGCGTCGGA AATTCCTGCG CGGCGCAGCA
GTGGCCGGAG CGGCCATGGT TGCAGCGCCG AGTATCGTCA GGGCACAAGG GCCGATCAGC
ATGCGCTGGC AGAGCACCTG GCCATCCAAA GACATCTTTC ACGAGTTCGC GCTCGACTTC
GCCAAGAAAG TCAACGACAT GACGGGGGGC GACCTTAGAA TAGAGGTGCT TCCGGCCGGT
GCCGTCGTGC CGGCATTCGG ACTGCTCGAC GCGGTGTCCG AAGGAACGCT CGACGGCGGC
CATGGCGTGA TGGTCTATCA CTACGGCAAG CAGACGGCGC TGGCACTATG GGGATCGGGA
CCAGGCTTCG CCATGGATGC CAACATGATG CTGGCGTGGC ACAAATATGG CGGCGGCAGG
GACCTGCTCG CAAAACTCTA CGAGTCCATA GGCGCAAATG TCGTATCGTT CCCCTACGGG
CCCATGCCGA CACAGCCGCT GGGCTGGTTC AAGGAGCCGA TCGCCAAGGC CGAGGATCTG
AAAGGATTGA AGTTCCGCAC CGTCGGTATC TCGATCGACG TGTTCACCGG GCTCGGCGCG
GCGGTAAACG CCCTGCCGGG CGGTGAGATC GTGGCGGCAC TCGATCGCGG ACTGCTCGAC
GCTGCGGAAT TCAACAATGC TTCGTCCGAT CGACTGCTGG GCTTTCCCGA CGTTTCGAAG
ATCTGCATGC TGCAAGGCTA TCATCAAAAC GCCGAGACGT TCGAGATCCT TTTCAACAAG
GGAAAATTCG AGGGCCTGCC AGACCAGTTG AAGGCAATCA TAACCAACGC GGTGGACGCG
GCTTCGGCAG ACATGGCCTG GAAGGCGATC GACCGGTATT CGACCGACTA TCGCGAGTTG
CAGTCGGCCG ACAAGGTCAA ATTCTACAAG ACTCCCGAGG CCATCCTGAA GCGGCAGCTC
GAGGTCTATG ACGAGGTCGT GAAGAGGAAA TCCTCGGAAA ATCCAGTGTT CAAGGAGGTC
CTGCAATCCC AGATCACTTT TGCCGAACGC GCAACCCGCT GGGAGCAGGA TACGGTCGTC
AACCGAAGGA TGGCCTTCGA TCATTATTTC GGGCCGGAGG GGGTCGCCAA GTCGCTCTGA
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| Protein sequence | MKHKAEIGES SRRKFLRGAA VAGAAMVAAP SIVRAQGPIS MRWQSTWPSK DIFHEFALDF
AKKVNDMTGG DLRIEVLPAG AVVPAFGLLD AVSEGTLDGG HGVMVYHYGK QTALALWGSG
PGFAMDANMM LAWHKYGGGR DLLAKLYESI GANVVSFPYG PMPTQPLGWF KEPIAKAEDL
KGLKFRTVGI SIDVFTGLGA AVNALPGGEI VAALDRGLLD AAEFNNASSD RLLGFPDVSK
ICMLQGYHQN AETFEILFNK GKFEGLPDQL KAIITNAVDA ASADMAWKAI DRYSTDYREL
QSADKVKFYK TPEAILKRQL EVYDEVVKRK SSENPVFKEV LQSQITFAER ATRWEQDTVV
NRRMAFDHYF GPEGVAKSL
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