Gene Smed_1864 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_1864 
Symbol 
ID5322722 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp1937283 
End bp1938443 
Gene Length1161 bp 
Protein Length386 aa 
Translation table11 
GC content56% 
IMG OID640790801 
Productalkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen 
Protein accessionYP_001327533 
Protein GI150397066 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0158194 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.397812 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGGAGAGCA ATAAGATCCT GTCTATGGAG TCACGGGCCC CCGCGCTGAA AGTGCGGGAC 
TGGGTACGTG GTGAGCCCCT TGCGAGCTTC CAGCCGGGTA AATTGTACAT TCTTGAATTT
TGTGGAACCA CATGTGACGG TTGTGAGCGG GCGATGCTCA ATCTGATAGA GCTGCAGGAG
AGTTATAAGG ACAGTGGAGT TGAGGTCGTC ACGGTCGCGG CACACGAAAG CGCTGCATCC
TCCGATGAGG CCCGAGGCAA GCTTGACGCG TGGTTGGCTA AGTTCCCGGA GTTGAACTTT
CCAGTCGCGT TCGACGACAC AGGCGCAATG AACACGCTAT GGATGGAGCC GAGTTTTTCG
ATCGTGATTC CGAGGCTGTT CGTGATCGAC CGAGACGGCT ACATTGCCTT TATCGGCCAT
CCGGACAAAC TGCACGACGT TCTTCCGCAC TTGCTGGACG GCACCTGGCG CACCAGCGCT
CAAGCGAAGG CAACGGAAAG CGAGCGCATC GCCGAAGATG AACCAAAAGC GCGCAAGCAT
GCGTTGTTGA AGCCGATCAG AGGCAAAAGA AGGGCAGCGG AGGGAATAGG GGATTGGATG
ACGGCCCTTA CGGCGGTCGA AGAGGGCATC GCCCTTGATC CGGACAGCTA CAATTTACGC
GCGTATCAAG TCCATCTGCT ACTTGATAAA ATGTGGGACA TGGAAAATGG CTTGGTGGTG
CTATGGCAAT TCGTTCGCGA AGCCATCGAC AGAGGCGACG CACATTGGCT GGTTACGGCG
ATGATGCAAA TCTTCCGTCA GAGCCTTCCC TCTGCCGAGC GTTTCGCGAT GGGCGAGGTG
CTATCAGAAC ACATCCTGGC CCTGGATCTC GCGCAATGCA ATCTCCCCGC GTCCCAGCTT
TTTCCGAAGG TGGCCCGCCA CTACTATGAG ATCGGCAACA AGGACCGCGC CGTCGAGTTG
CTCGAGCTGG CGCTGAAGTC GCTGGAGGGG CATGGAGCGA AAGAACGCCC TCAACTAGAT
CTGCTGCAGA CTCTGGCCAA TTACAAGGGC GAGACGGTTT GTTCCGGTGA TGTTTGTGTG
GTCCCGCGGA CGAATATTTC GACCGGTGCC ACGCCAAAGG CGGAGACGAA GAACCTCGAT
GAAAGAGGAG CTCTTGAATG A
 
Protein sequence
MESNKILSME SRAPALKVRD WVRGEPLASF QPGKLYILEF CGTTCDGCER AMLNLIELQE 
SYKDSGVEVV TVAAHESAAS SDEARGKLDA WLAKFPELNF PVAFDDTGAM NTLWMEPSFS
IVIPRLFVID RDGYIAFIGH PDKLHDVLPH LLDGTWRTSA QAKATESERI AEDEPKARKH
ALLKPIRGKR RAAEGIGDWM TALTAVEEGI ALDPDSYNLR AYQVHLLLDK MWDMENGLVV
LWQFVREAID RGDAHWLVTA MMQIFRQSLP SAERFAMGEV LSEHILALDL AQCNLPASQL
FPKVARHYYE IGNKDRAVEL LELALKSLEG HGAKERPQLD LLQTLANYKG ETVCSGDVCV
VPRTNISTGA TPKAETKNLD ERGALE