Gene Smed_1815 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_1815 
Symbol 
ID5322673 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp1896639 
End bp1897745 
Gene Length1107 bp 
Protein Length368 aa 
Translation table11 
GC content67% 
IMG OID640790753 
Producthypothetical protein 
Protein accessionYP_001327485 
Protein GI150397018 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0928113 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.00117602 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGCGAATT CCTACCTGTT CGGCGGCAAT ACGAGAGAGA CACCCGAATC CGTCAGGCGC 
AAGCGCCAAC TTGCCATGGC GATCATGGGG ACGGCCGCAC CGAAAAACAT CGGCGAGGGA
CTGAACGCAC TGGGCTCGGG CATCGTCGCA GGCATCATGA ACCGCCGGGC GGACAGGGCG
GAAGACGAGG GCCGCAGCGC TGCCCGCGCC GCCTATGACG GGGCTCTTGG CGGCATGCCG
GACCGGCAGG TCTCCAATGC GAGCGCATCC GCAGCGGCTC CGTCAAACTC CTCGCATTAT
CGCGACGCCA TCGCCTCGCT GGAGAGCGCA GGAAGCGGGG ACTATACGGC TATCGGACCG
ATGCATCCGA AACTTGGGCG TCCGCTCGGG CGATACCAGA TCATGGAAGC GAATATCGGA
CCCTGGTCCC GCGAGGCGCT GGGGCGCGAG GTGACGCCGG AAGAGTTCCT GTCGAGCCCC
GAAATCCAGG ACGCCATTTT CGACCACAAG TTCAATGCCT ATGTGCAGGA ATTCGGACCG
GAAGGCGCCG CGCAGGCATG GTTTGCCGGT CCGGGCGGCG TCGGCAAGAC GAGCCGCAAG
GACGCGCTGG GAACCGATGT CGGCACCTAT GGCCGCAAGT TCATGAACGT GCTCGGCCCG
CGGGGTGAGC CGACAGAGGC CGGCAGAGCC GAGCCGCCGG CAGGAATGCC TCCGCCGCCT
CCGGCGTCCC ACTCGCCCTT CGTGCCTTCG TTCCCAGGCA AGGAAGCGGA CGACCGGATA
GCGGCTCCCT CCCTGACGCC GCCGAATGCG CGTCCCCCGG AACAGGCAAT TCCGGCGCAG
TTCCAGGGTT CTCGGCAGCT CGCCAATGCC CAGGGCGGCA TCATGCCGGC GCTGATGGAC
GGCACGCCTG CCTCGCCCGA GCAGGTGGCG CAGGCGCAGG CGATCGGCCG GCGGCAACAG
GCACAGGCGC AAGCCGCCGA TCTGATGCCG TTGCTCGAGG CCATGGGCAA TCCCTGGCTC
TCGCCCGAGG AGAGGGCGGT TCTGCACAGG CTCTACGAGC AGCAGGTGCA GTCAGCAGAG
GCCCGGCGCA ACCCGCGGTG GGAATAG
 
Protein sequence
MANSYLFGGN TRETPESVRR KRQLAMAIMG TAAPKNIGEG LNALGSGIVA GIMNRRADRA 
EDEGRSAARA AYDGALGGMP DRQVSNASAS AAAPSNSSHY RDAIASLESA GSGDYTAIGP
MHPKLGRPLG RYQIMEANIG PWSREALGRE VTPEEFLSSP EIQDAIFDHK FNAYVQEFGP
EGAAQAWFAG PGGVGKTSRK DALGTDVGTY GRKFMNVLGP RGEPTEAGRA EPPAGMPPPP
PASHSPFVPS FPGKEADDRI AAPSLTPPNA RPPEQAIPAQ FQGSRQLANA QGGIMPALMD
GTPASPEQVA QAQAIGRRQQ AQAQAADLMP LLEAMGNPWL SPEERAVLHR LYEQQVQSAE
ARRNPRWE