Gene Smed_1764 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_1764 
Symbol 
ID5322622 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp1847812 
End bp1848627 
Gene Length816 bp 
Protein Length271 aa 
Translation table11 
GC content62% 
IMG OID640790702 
Productalpha/beta hydrolase fold 
Protein accessionYP_001327434 
Protein GI150396967 
COG category[R] General function prediction only 
COG ID[COG0596] Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)  
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.718391 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.0637777 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCATTATT GCGACGACGA TCTTCGGCGT TTCGAAGCGG AGGGGGCGGC GGCTCTGCCT 
CCTGCCGCGG AACAGGGCTT TGTCGAGCAC GATGGCGCCC GAATATGGTT TTCGATATAC
GGCGCCGGAA CACCGGTGCT CCTCCTGCAC GGCGGCCTCG GCCACAGCGG CAACTGGGGC
TATCAGCTTG CGCCGCTTCT CGAGGCGGGC CACCGCGTCG TGCTTGTCGA CAGTCGCGGA
CATGGGCGCA GTACGCGCGA TAAGCGGCCT TACAGCTATG AATTGATGGC ATCCGATGTG
CTTGCGGTCA TGGACAGGCT GCAGCTCCAC AACGCGGCGT TGGTAGGCTG GAGCGACGGG
GCATGCATCA GCCTCGTTCT TGCAAGGCAG GCTCCCGCGC GGATTGCCGG CGTCTTTTTC
TTCGCCTGCA ACATGGACCC GAGCGGCACA AAGGCGTTCG AGGCGACACC CGTCATCGAC
CGTTGCTTCG CCCGCCACCG GAAGGACTAC GCCGAATTAT CGGCCACGCC GGATGATTTC
GATGACTTTG TCGCGGACGT CGGCGAGATG ATGCGGACGC AACCCGATTA TTCGGCAGCC
GATCTTTCCG CGATCCGCGT GCCTGTCGCG ATCGTGCATG CAGAGAAGGA CGAGTTCATA
AAAATGGAGC ACGCCGAGTA TCTCGCCCGG AGCATTCCCT CGGCCGAACT GATTCCGCTT
CAAGGCGTCA GCCACTTTGC TCCGCTGCAG AGACCGGAAG TGTTCAATGG TGCCATGCTT
GCGTTCCTGG AGCGAATACG TCCCGCGGGT AGTTAG
 
Protein sequence
MHYCDDDLRR FEAEGAAALP PAAEQGFVEH DGARIWFSIY GAGTPVLLLH GGLGHSGNWG 
YQLAPLLEAG HRVVLVDSRG HGRSTRDKRP YSYELMASDV LAVMDRLQLH NAALVGWSDG
ACISLVLARQ APARIAGVFF FACNMDPSGT KAFEATPVID RCFARHRKDY AELSATPDDF
DDFVADVGEM MRTQPDYSAA DLSAIRVPVA IVHAEKDEFI KMEHAEYLAR SIPSAELIPL
QGVSHFAPLQ RPEVFNGAML AFLERIRPAG S