| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_1760 |
|---|
| Symbol | |
|---|
| ID | 5322618 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | - |
|---|
| Start bp | 1842139 |
|---|
| End bp | 1843203 |
|---|
| Gene Length | 1065 bp |
|---|
| Protein Length | 354 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640790698 |
|---|
| Product | cobalamin biosynthesis protein CobW |
|---|
| Protein accession | YP_001327430 |
|---|
| Protein GI | 150396963 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0523] Putative GTPases (G3E family) |
|---|
| TIGRFAM ID | [TIGR02475] cobalamin biosynthesis protein CobW |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0805096 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.0884735 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACACTCG CGAAGTCTCA GCAGGGCAAG ATTCCCGCTA CCGTCATCAC CGGGTTTCTC
GGTGCCGGCA AGACGACGAT GATCCGCAAT CTGCTGCAGA ATGCCGACGG CAAGCGCATC
GCGCTGATCA TCAACGAGTT CGGCGACCTA GGCGTCGACG GCGACGTGTT GAAGGGTTGC
GGAGCTGAAG CCTGCACGGA GGATGATATC ATCGAGCTGA CCAATGGCTG CATTTGCTGC
ACTGTTGCCG ACGACTTCAT TCCGACCATG ACGAAGCTGC TCGAAAGAGA GAACCGTCCG
GACCATATCA TCATCGAGAC CTCGGGCCTG GCGCTGCCGC AGCCGCTCGT CGCGGCATTC
AACTGGCCGG ACATCCGCAG CGAGGTAACG GTCGACGGCG TCGTTACCGT CGTCGATAGC
GCCGCCGTTG CCGCGGGCCG CTTCGCAGAC GATCATGACA AGGTGGACGC ACTCCGCGCA
GGCGATGAAA ATCTCGATCA TGAGAGCCCG CTCGAAGAAC TCTTCGAGGA CCAGCTCACA
GCTGCCGACC TCATCGTTCT CAACAAGACG GATCTCATCG ATGCCGCGGG GTTGAAGTCG
GTGCGCGATG AAGTGGCCTC ACGCATCAAC CGCAAGCCCA CCATGATCGA GGCGAAGAAC
GGTGAGGTAG CAGCTGCCAT CCTGCTCGGG CTCGGGGTGG GTACGGAGGG CGACATCGTC
AACCGCAAGT CTCACCACGA GATGGAGCAC GAGGCGGGCG AGGAGCATGA TCACGACGAA
TTCGACAGCT TCGTCGTCGA ACTGGGTGCC ATAGCCGATC CTGCCGTTTT CGTGGAACGG
CTCAGAAATG TGATCGCACA GCACGACGTG CTGCGCCTCA AGGGTTTCGT CGACGTTCCC
GGCAAATCGA TGCGCCTCCT GATACAGGCG GTGGGCAGCC GCATCGACCA GTATTTCGAT
CGCGCATGGG CTCCGGGCGA AACGCGCAGC ACACGGCTGG TCGTCATAGG CCTGCATGAC
ATGGATGAGC CTGCCCTGCG GGCGGCAATA TCGGCACTTG TGTAA
|
|---|
| Protein sequence | MTLAKSQQGK IPATVITGFL GAGKTTMIRN LLQNADGKRI ALIINEFGDL GVDGDVLKGC
GAEACTEDDI IELTNGCICC TVADDFIPTM TKLLERENRP DHIIIETSGL ALPQPLVAAF
NWPDIRSEVT VDGVVTVVDS AAVAAGRFAD DHDKVDALRA GDENLDHESP LEELFEDQLT
AADLIVLNKT DLIDAAGLKS VRDEVASRIN RKPTMIEAKN GEVAAAILLG LGVGTEGDIV
NRKSHHEMEH EAGEEHDHDE FDSFVVELGA IADPAVFVER LRNVIAQHDV LRLKGFVDVP
GKSMRLLIQA VGSRIDQYFD RAWAPGETRS TRLVVIGLHD MDEPALRAAI SALV
|
|---|
| |