Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_1611 |
Symbol | |
ID | 5322469 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | - |
Start bp | 1705251 |
End bp | 1706423 |
Gene Length | 1173 bp |
Protein Length | 390 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640790555 |
Product | extensin family protein |
Protein accession | YP_001327287 |
Protein GI | 150396820 |
COG category | [S] Function unknown |
COG ID | [COG3921] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.0689957 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.22002 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAAGGCGG CAATCAGTAT GGCGTATGTT TCTCTTCTCC ATCGTCCCCT GGCGGCGCTG CTATTGTCCA TTCCGCTCGT TGCCTGCACC ACGGACGTGC TTGCACCCCC GGCTAGAATC GACGGGGGCG CCCGTGTCGG CGCAATCAGC CCGGCCCCGG TTGCGATGCC GGAGCAGAAG GTTGCTGCCT ATCCCGCTGA AGGACCCGTC GCGATAGCCA GTCAGACCTC TGTTACGCCG GCGGCCAGCA GCGCAGTTCC GCCCGAAGGT GTGAACATGG ACGCCATGCT TGGCGTCGAA CCTGTCGTTG GGCTGGCGCA GGAGCAGTCG CGTGAAATCG CGGAAGGGAA TACAACGCAG CCGGTCGTGG CCGGAATCGG CGAGGGCGAT GTCCGCCAGC TTGCCGGAAC GCCGGAGCCG GCAGCACCGG CGGTCGAGAC GAACCCCGGC TTCGATCCCG ACCTGCCGCC TCTGACACCG GCAAAGAATT CGGCCGTGGA AGCCAAAAGT GGGCGCGCTC TCGCGCCGCA ACGGTCGGCG CCTGCCGAGG AATCACAGCA GGTCGCTTTC ATACCCCGCG CCCGCAGCCC GCTTTCCGCG CCGTCACATG CCGGCGCAAT GCCGGGTCCG GAGGTCGCCT GCCGGCAACG GTTGAAACAG CTCGGCGTCA TATTCCGTGA CGTACCGCAA ATCTACAACG GACCGTCCTG CGGTATCGAT TACCCGATCG AACTCAGCGG CCTTTCCGGC GATATCGCCG TCAAGCCCGC GGTGAAGCTC AACTGCCAGG TGACCGAAGC ATTCGCCAAA TGGGTGAAGT ACGAGCTCGC GCCATCGTCG CGCTACCGTT ACTGGTCGGG AGTGAAGACG ATCAAGCCGC TCGGCGGCTA TTCCTGCCGG ACGATGAACT CCCGGCGCGG TAATCCCATG TCGGAACATT CGCGCGGAAA TGCGATCGAT GTCGGCAAAT TCGTGCTGAA GAACGGCAAG GAAATCGATG TCCGCCGGAA AGGTCTCTTC GCCTTTCGCG AGAGGGGCCT GTTGAAGGCC GTACGCTCCG ATAGCTGCAA GTATTTCAAT ACGGTCCTTG GTCCTGGAAG CGATCCTTTC CACAAGGATC ATTTCCACTT CGATTTAAGG ACGCGCAAAA CCGGTTACCG GCATTGCGAC TAG
|
Protein sequence | MKAAISMAYV SLLHRPLAAL LLSIPLVACT TDVLAPPARI DGGARVGAIS PAPVAMPEQK VAAYPAEGPV AIASQTSVTP AASSAVPPEG VNMDAMLGVE PVVGLAQEQS REIAEGNTTQ PVVAGIGEGD VRQLAGTPEP AAPAVETNPG FDPDLPPLTP AKNSAVEAKS GRALAPQRSA PAEESQQVAF IPRARSPLSA PSHAGAMPGP EVACRQRLKQ LGVIFRDVPQ IYNGPSCGID YPIELSGLSG DIAVKPAVKL NCQVTEAFAK WVKYELAPSS RYRYWSGVKT IKPLGGYSCR TMNSRRGNPM SEHSRGNAID VGKFVLKNGK EIDVRRKGLF AFRERGLLKA VRSDSCKYFN TVLGPGSDPF HKDHFHFDLR TRKTGYRHCD
|
| |