| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_1576 |
|---|
| Symbol | fumC |
|---|
| ID | 5322434 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | + |
|---|
| Start bp | 1674597 |
|---|
| End bp | 1676045 |
|---|
| Gene Length | 1449 bp |
|---|
| Protein Length | 482 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640790520 |
|---|
| Product | fumarate hydratase |
|---|
| Protein accession | YP_001327252 |
|---|
| Protein GI | 150396785 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0114] Fumarase |
|---|
| TIGRFAM ID | [TIGR00979] fumarate hydratase, class II |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0866386 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.827447 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAACCGG CTCCCCGCCT CGGCTTCATG AACCGCATGA TGAAAGCAGG TATCACGATG
ACATCGACCC GCACGGAAAC TGATACGTTC GGCCCCATCG AGGTGGCGAG CGATCGTTAT
TGGGGCGCCC AGGCTCAGCG ATCCCTTGGC AATTTCAAAA TCGGCTGGGA GAAACAGCCC
CTGGCAGTCG TGCGTGCCCT CGGCATCGTC AAACAGGCGG CTGCTCGCGC CAATATGGCG
CTCGGTCGCC TCGATCCAAC GATCGGCGAC GCTATCGTCA AGGCCGCACA GGAAGTCATC
GACGGCAAAC TCGACGACCA TTTCCCCCTC GTCGTCTGGC AGACGGGCTC CGGCACCCAA
TCGAACATGA ATGCGAACGA GGTCATCTCC AATCGGGCCA TTGAGCTGCT CGGCGGGGTC
ATGGGCTCGA AAAAGCCGGT TCATCCGAAC GACCACGTCA ATATGAGCCA GTCCTCGAAC
GACACCTATC CGACGGCTAT GCACATCGCC TGCGCGGAGC GCGTGATTCA CGATCTGCTG
CCCGCCCTCA AGCATCTGCA TAAGGCGCTC GAAGAAAAGG TGAAGGCCTT CCAGTCCATC
ATCAAAATCG GACGTACCCA CACGCAGGAC GCGACGCCTC TAACGCTCGG GCAGGAGTTT
TCCGGCTATG CGGCACAGGT CGCCTCCTCG ATCAAGCGGA TCGAGATGAC GCTTCCCGGC
CTTTGCGAAC TCGCCCAAGG CGGCACGGCC GTCGGCACAG GGCTTAACGC ACCCGTCGGC
TTTGCAGAGA AGGTTGCGGA GCAAATCGCC AGCATCACCG GCATCGGCTT CACCTCCGCA
CCGAACAAGT TCGAAGCGCT GGCCGCTCAC GACTCGATGG TCTTCAGCCA CGGCGCCATC
AATGCCACTG CCGCCGCGCT CTTCAAAATA GCCAACGACA TCCGCTTTCT CGGCTCCGGC
CCCCGCTCCG GTCTCGGCGA GCTCTCGCTT CCGGAAAACG AGCCGGGTTC GTCGATCATG
CCGGGCAAAG TGAACCCCAC GCAATGCGAG GCGTTGACGC AGGTCTGCGT CCAGGTCTTC
GGTAACCACG CGTCCCTCAC CTTCGCCGGC AGCCAGGGCC ATTTCGAACT CAACGTCTAT
AATCCTCTGA TGGCCTACAA TTATCTGCAA TCGGTGCAGC TGCTCGCGGA TGCGGCCGTG
TCCTTCACCG ACAATTGCGT CGTCGGGATC GAGGCGCGCG AAGACAACAT CAAGGCGGCA
CTCGACCGTT CGCTCATGCT GGTGACTGCG CTCGCACCGA AGATCGGCTA CGACAACGCG
GCCAAGATCG CCAAGACCGC GCACAAGAAC GGCACGACAT TGCGCCAGGA GGCAGTCGGC
GGTGGGTACG TCACGGACGA GGAATTCGAT GCCGTGGTGC GTCCGGAAAC CATGATCGGA
CCGGCCTGA
|
|---|
| Protein sequence | MEPAPRLGFM NRMMKAGITM TSTRTETDTF GPIEVASDRY WGAQAQRSLG NFKIGWEKQP
LAVVRALGIV KQAAARANMA LGRLDPTIGD AIVKAAQEVI DGKLDDHFPL VVWQTGSGTQ
SNMNANEVIS NRAIELLGGV MGSKKPVHPN DHVNMSQSSN DTYPTAMHIA CAERVIHDLL
PALKHLHKAL EEKVKAFQSI IKIGRTHTQD ATPLTLGQEF SGYAAQVASS IKRIEMTLPG
LCELAQGGTA VGTGLNAPVG FAEKVAEQIA SITGIGFTSA PNKFEALAAH DSMVFSHGAI
NATAAALFKI ANDIRFLGSG PRSGLGELSL PENEPGSSIM PGKVNPTQCE ALTQVCVQVF
GNHASLTFAG SQGHFELNVY NPLMAYNYLQ SVQLLADAAV SFTDNCVVGI EAREDNIKAA
LDRSLMLVTA LAPKIGYDNA AKIAKTAHKN GTTLRQEAVG GGYVTDEEFD AVVRPETMIG
PA
|
|---|
| |