Gene Smed_1478 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_1478 
Symbol 
ID5322336 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp1564858 
End bp1566357 
Gene Length1500 bp 
Protein Length499 aa 
Translation table11 
GC content60% 
IMG OID640790426 
ProductDEAD/DEAH box helicase domain-containing protein 
Protein accessionYP_001327158 
Protein GI150396691 
COG category[J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair 
COG ID[COG0513] Superfamily II DNA and RNA helicases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0142934 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.00960181 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
TTGACCAATT TCGCTGACCT TGGCTTGAGC CAGAAAGTTC TTTCCGCAGT TACCGACGCG 
GGCTACACGA TACCGACACC GATCCAGATT GGTGCAATCC CGCCGGCGCT TCAGCGCCGC
GACATTCTCG GCATCGCCCA GACCGGCACC GGCAAGACCG CATCCTTCGT GTTGCCGATG
TTGACCCTTC TGGAAAAAGG ACGCGCCCGC GCACGGATGC CGCGCACGCT TATACTTGAG
CCGACGCGCG AGCTCGCGGC CCAGGTCGCC GAGAATTTCG ACAAATACGG CAAGAATCAC
AAGCTTAACA TCGCGCTTCT GATTGGTGGC GTTTCCTTCG ACGAGCAGGA CCGCAAGCTC
GAGCGCGGCG CCGACGTGCT GATTTGTACG CCCGGCCGGC TGCTCGACCA CTGCGAGCGT
GGCAAGCTTT TGATGTCAGG CGTCGAAATT CTTGTCATCG ACGAGGCTGA CCGAATGCTC
GATATGGGAT TCATTCCTGA TATCGAACGT ATCGCGAAGC TCATTCCCTT TACACGGCAG
ACCTTGTTCT TCTCAGCCAC GATGCCGCCC GAAATCCAGA AGCTTGCGGA TCGCTTTCTG
CAGAATCCGG AGCGGGTCGA AGTGGCACGC CGGTCATCGA CAGCCATAAC GGTCACGCAG
CGTCTCGTGG CAGCGCACGG CAAGGACTAC GAAAAGCGAG CCGTCCTCCG TGAGCTCATT
CGTTCCCAGG AAGACCTGAA GAACGCGATC ATCTTCTGCA ATCGCAAGAA GGATGTCGCC
GAGCTTTTCC GCTCGCTCGA CCGTCATGGC TTCTCGGTCG GCGCGCTGCA CGGCGACATG
GATCAGCGGT CGCGCATGGC CATGCTTGCC AATTTCAAGG ACGGCAACAT CAAGCTGTTG
GTCGCCTCCG ATGTCGCGGC GCGCGGGCTC GACATTCCCG ACGTGAGCCA TGTATTCAAT
TTCGACGTGC CGATCCATGC GGAAGACTAT GTCCATCGCA TCGGACGAAC CGGGCGCGCT
GGCCGTTCCG GTGCCTCTTT CACAATCGTC ACGAAGCGCG ACATCAAGTT CGCCGACGCC
ATCGAAAAGC TGATCGGCCA GGAAGTCGAA TGGCACAATG GCGACCTTTC GGAACTGCCC
GAACCGATGG AAAGTCACGA CAGCCGTCGT GACCGCGGCA GCGACGGGCG CAAGGATCGG
AAGAGGGAGC GACCCGTGAA GACCCGCTCC GATCACAAAG CTGTCACGGC CGTAGACAAT
AATACTGAAG AACTCGAAAC AGTCCCGGAA AGGGTCGACA CGGTGAAGAT CGAACGCAAT
GCCGAGAGCA AGGATCGCCA TAACGGCCGC AGCGACCGTC CTGGCCGCGC GCAGAATGCG
GCTAATGACG ACAATCGCGA TCGTCGGCAG CGTCACCGCC GCGACCATGA CGACGGCCCT
ACGCCCGTGG GTTTCGGTGA TGACATCCCA GCCTTCATGC TGATCGTCGG CAAGGCCTGA
 
Protein sequence
MTNFADLGLS QKVLSAVTDA GYTIPTPIQI GAIPPALQRR DILGIAQTGT GKTASFVLPM 
LTLLEKGRAR ARMPRTLILE PTRELAAQVA ENFDKYGKNH KLNIALLIGG VSFDEQDRKL
ERGADVLICT PGRLLDHCER GKLLMSGVEI LVIDEADRML DMGFIPDIER IAKLIPFTRQ
TLFFSATMPP EIQKLADRFL QNPERVEVAR RSSTAITVTQ RLVAAHGKDY EKRAVLRELI
RSQEDLKNAI IFCNRKKDVA ELFRSLDRHG FSVGALHGDM DQRSRMAMLA NFKDGNIKLL
VASDVAARGL DIPDVSHVFN FDVPIHAEDY VHRIGRTGRA GRSGASFTIV TKRDIKFADA
IEKLIGQEVE WHNGDLSELP EPMESHDSRR DRGSDGRKDR KRERPVKTRS DHKAVTAVDN
NTEELETVPE RVDTVKIERN AESKDRHNGR SDRPGRAQNA ANDDNRDRRQ RHRRDHDDGP
TPVGFGDDIP AFMLIVGKA