| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_1152 |
|---|
| Symbol | |
|---|
| ID | 5321998 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | + |
|---|
| Start bp | 1226053 |
|---|
| End bp | 1227300 |
|---|
| Gene Length | 1248 bp |
|---|
| Protein Length | 415 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640790093 |
|---|
| Product | aromatic hydrocarbon degradation membrane protein |
|---|
| Protein accession | YP_001326838 |
|---|
| Protein GI | 150396371 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG2067] Long-chain fatty acid transport protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0462586 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTCGGA TTGGATTGAA GCGGGGTGTT CTGGCTGCGG TTGCCGGAAT GCTCGTGGCC
TCGGCTGCGC AGGCGGGAGG GCTGGAGCGC AGCGGCTATA ATATCGATCT TCTGTTCGAC
CCGTCGGACT ATGCGGCCGA AGCGACGGCG ACCTACGTTA ATCCGCAGCG TGAGCTGAAG
AATGTCGCCG ATATCAACCC GGCAAATGGG ATCGGCTCCA ACGGGATCGG TGGGGGAAGC
ACAAGCGTTC GGGACACGGA GAGTTATTGG GCGCCCCGTA TTGGAGTAAA GGCTGGTCTG
GGTGACAGCA TTGACTGTAT GGCGGACTAC TCCCAGCCTT GGGGCGCCCA CACCAATCCA
GGCAAGAATT GGATGGGTGC GAACGACAAC ATCGAAACGA AAGTCGAAAG CGACAATTAT
GCGGCCACCT GCTCCTATAA GTGGGACGTA GGCCCCGGTG TCGTGCGCAT CATCGGCGGT
GGTTTCTACC AGGAAATCGG CGGCTTCAAA GATAGGCTCG TCGCCCCCGA AATCGCGGTA
GCGCCGCTTA CCGGTGTTGG CCGACTTGAA CTCGAAGGCG AGGCGTGGGG TTGGCGCACC
GGTATCGCCT ATGAGATTCC GGAATATGCA ATGCGGGCAA GTCTCGTCTA CAACAGCAAG
GTCGACTATG ACGATTTGTC CGGATTCATT GACCTGACGC AGTTCGCATT CCCGACGCCA
GGTGGACCGA TCCGTGGCAC CAAATACGAT GTTTCGGGTT CCGCCTCGAT GCCGGACTCG
CTGGAACTAA AGGTGCAGTC CGGTATTGCT CCTGGTTGGT TGGCTTTCGG CTCGGTCAAG
TGGACGGACT GGAGCCAATT GCAAGTCCTC GAGTTCTGCC CGGCGACCGC CTCACCGCTT
ACGCCGTGCA CCACCCTTGA TCTCCTTTAT CGCGACGGTT GGACCGTTAC CGGCGGCGTC
GGCCATAAGT TCAACGATCA GTGGAGCGGC GCGGTCAGCC TCACCTGGGA CCGCGGTACG
AGTCACGGCT ATGGCACCCA GACCGACACG TGGCTGCTGG GATCCGGCGT CTCCTATACT
CCGACGGAGA ACGTCGAACT TCGCCTCGCT GGCAGTGTCG GTATTTTGAC CAGCGGGAGT
TCCGGCCCGG TCAGTTTCAA TGGCGAGAGG ATCGGCAATG AGGTCACCTA CGATTTCGAC
AACGACTTCG TCGGGGCGAT CTCGACATCG CTGAAGGTCA GGTTCTGA
|
|---|
| Protein sequence | MARIGLKRGV LAAVAGMLVA SAAQAGGLER SGYNIDLLFD PSDYAAEATA TYVNPQRELK
NVADINPANG IGSNGIGGGS TSVRDTESYW APRIGVKAGL GDSIDCMADY SQPWGAHTNP
GKNWMGANDN IETKVESDNY AATCSYKWDV GPGVVRIIGG GFYQEIGGFK DRLVAPEIAV
APLTGVGRLE LEGEAWGWRT GIAYEIPEYA MRASLVYNSK VDYDDLSGFI DLTQFAFPTP
GGPIRGTKYD VSGSASMPDS LELKVQSGIA PGWLAFGSVK WTDWSQLQVL EFCPATASPL
TPCTTLDLLY RDGWTVTGGV GHKFNDQWSG AVSLTWDRGT SHGYGTQTDT WLLGSGVSYT
PTENVELRLA GSVGILTSGS SGPVSFNGER IGNEVTYDFD NDFVGAISTS LKVRF
|
|---|
| |