Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_1071 |
Symbol | |
ID | 5321917 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | + |
Start bp | 1139283 |
End bp | 1140122 |
Gene Length | 840 bp |
Protein Length | 279 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640790014 |
Product | 2-dehydro-3-deoxyphosphooctonate aldolase |
Protein accession | YP_001326759 |
Protein GI | 150396292 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG2877] 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase |
TIGRFAM ID | [TIGR01362] 3-deoxy-8-phosphooctulonate synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.509149 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAAACCA ATTCGAGAGT GGTCGTCGGC GAAGGTGCCG GCCAGGTGGT GTTCTCGCAG AAGGAGCGGC TGACGCTTAT CGCCGGACCC TGCCAGATGG AAAGCCGCGA ACACGCCTTC ACGATTGCGG GAAAGCTTGT CGAGCTCTGT AGATCGCTCG GGATCGGCCT CGTCTACAAG TCCTCTTTCG ACAAGGCGAA CCGCACGTCC CTCTCCGGAA AGCGCGGCAT CGGGCTCGAC AATGCGATGG AAGTCTTTGC CGACCTCAAG CGTGAATTCG GCTTCCCGGT CCTGACCGAT ATCCATACGG AAGAGCAATG CGCGCTGGTC GCCGAGACGG TGGACATCCT GCAGATCCCC GCCTTTCTGT CGCGCCAGAC TGACCTTCTC GTCGCTGCCG CGAAGACGGG GCGCGCGATC AACGTCAAGA AGGGCCAGTT TCTCGCCCCC TGGGACATGA AGAACGTGCT CGCCAAATTT ACGCAGAGTG GCAATCCCAA TGTGCTCCTC TGCGAACGCG GCGCCTCCTT CGGCTATAAT ACGCTGGTCT CCGACATGCG CTCGCTGCCG ATCATGGCGG CACTCGGCGC TCCCGTGGTC TTCGATGCGA CGCATTCCGT GCAGCAGCCA GGCGGCCAGG GCGGTTCTTC CGGTGGCCAG CGCGAGTTCG TCGAAACGCT GGCGCGTGCG GCGGTGGCCG TCGGCGTCGC CGGGGTCTTC GTTGAGACCC ACGAGGATCC CGACAACGCT CCCTCGGACG GTCCGAACAT GGTGCCGCTG AAGGACATGC CGCGGCTGCT GGAGAAACTG CTTGCCTTTG ACGCGATCGC CAAAGGGTGA
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Protein sequence | METNSRVVVG EGAGQVVFSQ KERLTLIAGP CQMESREHAF TIAGKLVELC RSLGIGLVYK SSFDKANRTS LSGKRGIGLD NAMEVFADLK REFGFPVLTD IHTEEQCALV AETVDILQIP AFLSRQTDLL VAAAKTGRAI NVKKGQFLAP WDMKNVLAKF TQSGNPNVLL CERGASFGYN TLVSDMRSLP IMAALGAPVV FDATHSVQQP GGQGGSSGGQ REFVETLARA AVAVGVAGVF VETHEDPDNA PSDGPNMVPL KDMPRLLEKL LAFDAIAKG
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