Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_1015 |
Symbol | |
ID | 5321860 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | + |
Start bp | 1086000 |
End bp | 1087310 |
Gene Length | 1311 bp |
Protein Length | 436 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640789957 |
Product | recombination factor protein RarA |
Protein accession | YP_001326703 |
Protein GI | 150396236 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG2256] ATPase related to the helicase subunit of the Holliday junction resolvase |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.00103733 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 0.467953 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAGCGACC TCTTCGCCCC CCATGAACCT CCTGAGATGG CCTCGGCAAG GCCACTTGCG GACCGGCTGC GGCCGCGTAC GCTGGGAGAG GTGACCGGCC AGGAACATCT GACCGGCGCT GACGGTGGAC TCACCCGGAT GATTGCCTCC GGATCGCTTG GCTCAATGAT CTTCTGGGGA CCGCCCGGAA CAGGAAAGAC GACCGTTGCC CGTCTGCTTT CAGGCGAAGC CGGCCTTGCC TTCGAGCAGA TATCGGCGAT CTTCTCCGGC GTGGCGGATT TGAAGAAAGT GTTCGAATCG GCGCGCGCGC GGCGGATGTC GGGGCGCCAG ACGCTGCTGT TCGTCGATGA GATCCATCGG TTCAATCGAG CGCAGCAGGA CAGCTTCCTT CCGGTCATCG AGGACGGCAC CGTGATTCTG GTCGGCGCCA CGACCGAGAA CCCGTCCTTT GAGCTTAACG CCGCGCTTCT GTCGCGCGCG CGCGTTTTGA CGTTCAAACC GCACGATGAG TCTAGCCTTG AGGAACTCCT GAAACGAGCG GAGGCGGCCG AGGGAAAATC GCTCCCGCTC GACGGCGACG CGCGGGCGAG CCTGATCCGC ATGGCGGACG GGGATGGCCG TGCCATACTG ACACTCGCCG AAGAGGTGTG GCGGGCAGCG CGCCCGGATG AGCTATTCGA TGTCGCGGCG CTTCAGGAGA TCGTTCAGCG CCGCGCACCG GTTTACGACA AAGGTCAGGA CGGTCACTAC AATCTGATCT CGGCGCTCCA TAAATCCGTT CGAGGGTCCG ACCCCGATGC GGCACTCTAC TATCTATGCC GCATGTTCGA TGCCGGTGAG GATCCGCTTT ATATCGGCAG ACGCTTGGTG CGGATGGCGG TCGAGGATAT AGGGCTTGGC GATCCACAGG CACTGGTGAT CTGCAACGCA GCCAAGGATG CATATGATTA TCTGGGCTCT CCGGAAGGAG AACTGGCTCT CGCCCAGGCC TGCGTCTATC TCGCGACGGC GCCCAAGTCC AACGCGGTTT ATACCGCCTA CAAGGCGGCG ATGCGCGCCG CCAGGGAAAA CGGCTCTCTT CTGCCCCCGA AGCACATCCT CAATGCACCG ACGAAGCTTA TGAAAGGGGA AGGCTACGGC GACGGGTATC GCTACGATCA CGACGAGCCC GATGCTTTCT CGGGGCAGGA CTATTTCCCT GAGAAGATGG GCAGAAAGAC CTTTTACGAT CCTCCGGAGC GCGGCTTCGA GCGCGAAATC CGAAAGCGGT TGGAATGGTG GAACAAGCTT CGGCGTGACC GCAATCCATG A
|
Protein sequence | MSDLFAPHEP PEMASARPLA DRLRPRTLGE VTGQEHLTGA DGGLTRMIAS GSLGSMIFWG PPGTGKTTVA RLLSGEAGLA FEQISAIFSG VADLKKVFES ARARRMSGRQ TLLFVDEIHR FNRAQQDSFL PVIEDGTVIL VGATTENPSF ELNAALLSRA RVLTFKPHDE SSLEELLKRA EAAEGKSLPL DGDARASLIR MADGDGRAIL TLAEEVWRAA RPDELFDVAA LQEIVQRRAP VYDKGQDGHY NLISALHKSV RGSDPDAALY YLCRMFDAGE DPLYIGRRLV RMAVEDIGLG DPQALVICNA AKDAYDYLGS PEGELALAQA CVYLATAPKS NAVYTAYKAA MRAARENGSL LPPKHILNAP TKLMKGEGYG DGYRYDHDEP DAFSGQDYFP EKMGRKTFYD PPERGFEREI RKRLEWWNKL RRDRNP
|
| |