| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_0873 |
|---|
| Symbol | clpX |
|---|
| ID | 5321711 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | + |
|---|
| Start bp | 931831 |
|---|
| End bp | 933108 |
|---|
| Gene Length | 1278 bp |
|---|
| Protein Length | 425 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640789810 |
|---|
| Product | ATP-dependent protease ATP-binding subunit ClpX |
|---|
| Protein accession | YP_001326563 |
|---|
| Protein GI | 150396096 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG1219] ATP-dependent protease Clp, ATPase subunit |
|---|
| TIGRFAM ID | [TIGR00382] endopeptidase Clp ATP-binding regulatory subunit (clpX) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAAGG TCAGCGGTAG CAACGGCGGT GACTCGAAGA ATACCCTCTA TTGTTCGTTT
TGCGGCAAGA GCCAGCATGA AGTCCGCAAG CTGATTGCCG GACCGACCGT GTTCATCTGC
GATGAATGCG TCGAACTCTG CATGGACATC ATCCGCGAAG AGAACAAGAC CTCGATGGTC
AAATCTCGCG ACGGCGTTCC GACGCCGCAG GAGATCATCA AGGTCCTCGA CGAATACGTC
ATCGGGCAGC AGCAGGCAAA GCGCATCCTG TCGGTCGCGG TGCACAACCA CTACAAGCGC
CTTGCCCATG CGGCAAAGAG CAGTGACGTA GAATTGGCGA AGTCGAACAT CATGCTCGTC
GGGCCCACCG GTTGCGGCAA GACTTACCTT GCGCAGACCC TCGCCCGCAT CATCGACGTT
CCCTTCACGA TGGCCGACGC GACGACCCTG ACGGAAGCCG GTTACGTCGG TGAAGATGTC
GAAAACATCA TCCTGAAGCT TCTGCAAGCC GCCGATTATA ACGTCGAGCG CGCTCAGCGC
GGCATCGTCT ATATCGACGA AGTCGACAAG ATTTCCCGTA AATCCGACAA CCCGTCGATC
ACGCGGGACG TCTCGGGCGA GGGCGTGCAG CAGGCGCTTC TGAAGATCAT GGAAGGGACC
GTCGCTTCGG TGCCGCCTCA GGGCGGCCGC AAGCACCCGC AGCAGGAATT CCTGCAGGTG
GATACGACGA ATATCCTCTT CATTTGTGGT GGCGCTTTTG CGGGCCTCGA CAAGATCATT
TCCGCTCGCG GCGAAAAGAC GTCGATCGGC TTCGGCGCAA CCGTGCGCGC TCCGGAAGAC
CGCCGGGTCG GCGAGGTGCT GCGCGAGCTC GAGCCGGAGG ATCTGGTAAA ATTCGGCCTG
ATACCCGAGT TCATCGGAAG GTTGCCGGTT CTGGCGACGC TCGAAGACCT CGACGAAGAT
GCGCTGATCC AGATCCTGTC GGAGCCGAAG AACGCCTTGG TCAAGCAGTA TCAGCGGCTC
TTCGAAATGG AAGACGTCGA GCTGAACTTC CACGAAGACG CGCTGCGCGA GATCGCCCGG
AGGGCGATCG TCCGCAAGAC CGGCGCACGC GGTCTGCGTT CGATCATGGA GAAGATCCTG
CTCGACACCA TGTTCGAGCT GCCGACGCTG GAAGGCGTTC GCGAGGTCGT GATTTCGGAG
GAAGTCGTAA AGGGGACGGC GCGACCGCTC TATATCTACT CGGAGCGCTC CGAGGAGAAG
ACCAACGTTT CGGCCTGA
|
|---|
| Protein sequence | MSKVSGSNGG DSKNTLYCSF CGKSQHEVRK LIAGPTVFIC DECVELCMDI IREENKTSMV
KSRDGVPTPQ EIIKVLDEYV IGQQQAKRIL SVAVHNHYKR LAHAAKSSDV ELAKSNIMLV
GPTGCGKTYL AQTLARIIDV PFTMADATTL TEAGYVGEDV ENIILKLLQA ADYNVERAQR
GIVYIDEVDK ISRKSDNPSI TRDVSGEGVQ QALLKIMEGT VASVPPQGGR KHPQQEFLQV
DTTNILFICG GAFAGLDKII SARGEKTSIG FGATVRAPED RRVGEVLREL EPEDLVKFGL
IPEFIGRLPV LATLEDLDED ALIQILSEPK NALVKQYQRL FEMEDVELNF HEDALREIAR
RAIVRKTGAR GLRSIMEKIL LDTMFELPTL EGVREVVISE EVVKGTARPL YIYSERSEEK
TNVSA
|
|---|
| |