Gene Smed_0516 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_0516 
Symbol 
ID5321350 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand+ 
Start bp559679 
End bp560779 
Gene Length1101 bp 
Protein Length366 aa 
Translation table11 
GC content62% 
IMG OID640789450 
Product3,4-dihydroxy-2-butanone 4-phosphate synthase 
Protein accessionYP_001326207 
Protein GI150395740 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0108] 3,4-dihydroxy-2-butanone 4-phosphate synthase
[COG0807] GTP cyclohydrolase II 
TIGRFAM ID[TIGR00506] 3,4-dihydroxy-2-butanone 4-phosphate synthase 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCTACG ACCAAAAGCG CGTCGTCGAA GCCATTCGCG CATTTGAAGC GGGAGAGATC 
GTCGTCGTCA CCGACGACGG AGGTCGCGAG AACGAGGGCG ACCTGATCGT CGCGGCGGTA 
CACTGCACGC CTGAGAAGAT GGCGTTTATC GTGCGCCATA CGTCCGGCAT CGTCTGCACG 
CCGATGCCGC GCGAGGAGGC GAAGCGCCTG AATCTGAATG CGATGGTTGC CGAGAACGAC 
TCCGCTCACA CCACGGCCTT CACCGTGTCG GTTGATTTCA AGCACGGGAC CACGACCGGC 
ATTTCCGCGG ACGATCGTAC GCTGACGGCC AGAAACCTTG CAAATCCGAA TGTCGGGCCG 
ACGGATTTCG TCCGGCCGGG CCATATATTC CCTCTGGTCG CCCGCGAGGG TGGAGTGCTG 
ATGCGCTCCG GTCATACCGA GGCCGCGGTC GATCTCTGCC GGCTTGCAAG CCTGCCGCCT 
ATCGGGGTCA TCTGCGAGCT CGTCAACGAT GACGGCACGG TCATGCGCGG TCCACAGGTC 
GAAACCTTCG CCGAAGCACA CGGCCTCAAG CAGGTCTCCG TGGCCGATCT CATCGCCTAC 
CGTCAGCGCA AGGAGACCTT GATCGAGAAG GGGCATTCCT TCGAGATGAA TACGCCCTGC 
GGCAAGGCCG TGGGCCACAC CTATTCGCTT CCATGGGATC CGATGCAGCA CCTGGCGGTG 
GTCTTCGGCG ACGTCAGGGA CGGTGTCGAC ATTCCGGTTC GCCTCCATCT CGAAAATGTC 
GGAGCAGACG TCTTCGGAAA CGGCCGCCAG ATCGACGAGA TCATGAAACG CATCGCGGCA 
GAGGGCAGGG GCGTCATCGT CTACCTGCGC GAGGGTTCGG TAGGCGTCGG CGTTTCACAG 
ACCGCGCGTA AGGGCAAACA CGAACGGGAA GCGCATTCGG AGGCGCAGAC GCGCGAAAGC 
GAGTGGCTGG AGATCGGCCT CGGAGCGCAG ATCCTGAAAG ATCTGGGCAT TACCTCCATT 
CGCCTTCTTT CGACGCGCGA ACGGCACTAT GTCGGCCTGG AGGGTTTCGG CATCAAGATC 
GCCGCCACCG AGATTTTGTG A
 
Protein sequence
MSYDQKRVVE AIRAFEAGEI VVVTDDGGRE NEGDLIVAAV HCTPEKMAFI VRHTSGIVCT 
PMPREEAKRL NLNAMVAEND SAHTTAFTVS VDFKHGTTTG ISADDRTLTA RNLANPNVGP 
TDFVRPGHIF PLVAREGGVL MRSGHTEAAV DLCRLASLPP IGVICELVND DGTVMRGPQV 
ETFAEAHGLK QVSVADLIAY RQRKETLIEK GHSFEMNTPC GKAVGHTYSL PWDPMQHLAV 
VFGDVRDGVD IPVRLHLENV GADVFGNGRQ IDEIMKRIAA EGRGVIVYLR EGSVGVGVSQ 
TARKGKHERE AHSEAQTRES EWLEIGLGAQ ILKDLGITSI RLLSTRERHY VGLEGFGIKI 
AATEIL