| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_0472 |
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| Symbol | |
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| ID | 5321306 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | - |
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| Start bp | 508946 |
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| End bp | 511174 |
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| Gene Length | 2229 bp |
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| Protein Length | 742 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640789407 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001326164 |
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| Protein GI | 150395697 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGCAGC CGTCTTTCAG AACGAGGTTC GACGCAGTCG CGGTGCCCTC GTTACGCCAA
TATGTCGCCG AAACAGACAG GAAATACCGC GCCACCGCAT TCGGCGTCCG GCTGCAGGAG
AGCCTGAAAT CGCTGCTGGA CGATCCCGCA GGCTACCTGT CCTTTGCGGT TCTCAACGCC
CGGCTGGAAA CCGAGTACTA CTTTGAAAAC AGCTGGGATC CTTTTGCGGA GATCGATCAG
GCACAGCTCG ATCTCGCCCG CCAGCTGGCC AACGGTTCGA AACTCGGCGA CTGGACCTAT
GTCGACGCCA CCGGTGAAAG GCCGCGGATC GTCTATTCCT TGTTCGTCGA TCCGATAACC
TTCGGCCGGC CTTCCCCCAG CAACAGGAAA AATGCTCTCT TGATGCAGGT TGCGGTGCAA
CCCGATCGTT TTCTGAAGCT GCAGGCAGCC CTTGAAAAGG AATATGGAGC GGATATCGTC
CTCCAGCCCT GGCCCCTCGC GGTTACCGAC GACCTCTCGG CGAGCGTCCC TCTCGGACCT
TCCCTGCATG CGACCTTGAC GGTTTCGGAT ACGCATTTCA ACGCACAGAT GCTGCGGCAG
AAAGTGCTTC TGGCGCTTGG CGCATTGGCC ATGAGTCTGT TCTCGATCTG GCTCATCGTC
GTGCTCATTC GCCGCTTCAT AACTGGGCCG ATCGCAACGC TCGATGCCAA TGTCATGGCC
GTGATGGCCG CAGAACGCGA AGAGATCGCA AAGGTGGGCG GGGCGGGAGA AATCGGCCGT
CTTACCGGCA ACATCCGCGA GCTGCATCGG CAATCCGTGC AGTCCCTTCA ACTCGTACAG
CGGAGTTCAT GGACCGACGC GTTGACAGGC ATCAACAATC GGGCGCGCTT CAACATCCTT
GCAGCGCAGG CCGTGCGGGA AACCGTCGCG TCCGGCGACA AATGCAGCCT TCTTTTCATC
GACATCGACA ATTTCAAATT TGTCAACGAC AAGCACGGCC ATGACGTCGG AGACGAACTC
CTGAAGACGC TCGCGGCCCG GATCGCCCAT GATGTCGGGG CAATCACGGG CGGGCGCGGT
CAGGAGCCGG CCATTCTCGC CCGGCTGTCC GGCGACGAGT TTGCGGTTCT CCTACGCTCG
CAGCCCGGCG ACGGCGTGGT GAGGGAGACC TGCGCTGCAA TCCTCGCGCT ATTTTCGGAC
GGGTTCGAGC TGTCCGGCAA GCGTTATCCG GTCACGGCAA GCATCGGCGT GGCGGTATGT
CCTGATGATG CGAGCTCGGT CGCGGAACTG ATCTCGAATT CGGACGCCGC AATGTATCAG
GCCAAAAGCG CCGGCAAGAA CCGCTCCGCC CGCTTTTCCC GCGCGCTCAA CGACAAGCGA
ACCCGCCAGC GACAGATCCA GGACGAGCTG CGCTCACTCG ACCCTGACCA ACAGTTTCAT
CTGGTCTACA TGCCCATCGT GGACGCGGGC GGAAAAGTTA ACGGCTGCGA GGCGCTGCTG
CGCTGGTACT CGCCGGTCCT TGGGAACGTG ACGCCCGATG AATTCGTGCC GATCGCCGAG
AGCTCCGGTC TGTTCACGAA GATCGACTGG TGGGTCGTAG ACAAGGCGAT GTCGGACTGC
CGTCAGCTGA AGGCGCTGTT CGGGCCAGAT ACGGTGCTGG CGATCAACAT ATCGTCGGCC
GAGCTGCACT CGAAGGCGAT CAGTGAACAT CTTTCGGACT GCCTCGCGCG CCACAATCTC
GAGGCTCAAT CGATCGACAT CGAGCTTACA GAGACTTTCG CGGTCCAGAT CAGCGACCAA
TTGCGCCTGC GTATGGATGA GTTGCGAAGC AAGGGCTTCC GGCTGTCCAT AGACGATTTC
GGCGCTGGCT ACACTTCGGT CCAGCAGATC ATCGGCTACG CCGCCGACAC CATCAAGCTC
GACCGGGAGC TCGTCTCGAA CCTGAACGCT TCGGAGTCCC TGGCGGTGCT CAGGGCAGTG
ATCGCGCTAT GCCACGCGAA AGGGATGGCC GTGGTCGGGG AAGGTGTCGA TACGCCGGAA
AAGCTCGCTA TGTTGAAGGC TGCAGGCTGC GACCGCTTTC AGGGCTATCT GATCAGTAAG
CCGCTCCCGC TCGCCGAACT GGCAATCTGG GCGTTGTCTC GCGTCGCGCA CGCCGTTGAA
AAACCGGCTG ACAGCAGCTT CCGGCCCGAG AGCAAGACGC CGGAAGACGC AAGGAAAATT
GCAGGCTGA
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| Protein sequence | MPQPSFRTRF DAVAVPSLRQ YVAETDRKYR ATAFGVRLQE SLKSLLDDPA GYLSFAVLNA
RLETEYYFEN SWDPFAEIDQ AQLDLARQLA NGSKLGDWTY VDATGERPRI VYSLFVDPIT
FGRPSPSNRK NALLMQVAVQ PDRFLKLQAA LEKEYGADIV LQPWPLAVTD DLSASVPLGP
SLHATLTVSD THFNAQMLRQ KVLLALGALA MSLFSIWLIV VLIRRFITGP IATLDANVMA
VMAAEREEIA KVGGAGEIGR LTGNIRELHR QSVQSLQLVQ RSSWTDALTG INNRARFNIL
AAQAVRETVA SGDKCSLLFI DIDNFKFVND KHGHDVGDEL LKTLAARIAH DVGAITGGRG
QEPAILARLS GDEFAVLLRS QPGDGVVRET CAAILALFSD GFELSGKRYP VTASIGVAVC
PDDASSVAEL ISNSDAAMYQ AKSAGKNRSA RFSRALNDKR TRQRQIQDEL RSLDPDQQFH
LVYMPIVDAG GKVNGCEALL RWYSPVLGNV TPDEFVPIAE SSGLFTKIDW WVVDKAMSDC
RQLKALFGPD TVLAINISSA ELHSKAISEH LSDCLARHNL EAQSIDIELT ETFAVQISDQ
LRLRMDELRS KGFRLSIDDF GAGYTSVQQI IGYAADTIKL DRELVSNLNA SESLAVLRAV
IALCHAKGMA VVGEGVDTPE KLAMLKAAGC DRFQGYLISK PLPLAELAIW ALSRVAHAVE
KPADSSFRPE SKTPEDARKI AG
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