Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_0315 |
Symbol | |
ID | 5321147 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | + |
Start bp | 340138 |
End bp | 342090 |
Gene Length | 1953 bp |
Protein Length | 650 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640789250 |
Product | acetoacetyl-CoA synthetase |
Protein accession | YP_001326009 |
Protein GI | 150395542 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG0365] Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases |
TIGRFAM ID | [TIGR01217] acetoacetyl-CoA synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAAGCAG ATCTGCCTTT GTGGGTGCCG GACAGGGAGA TTCTCGAACA TAGCCCGATG GCTGAGTTCA TCGCCTGGTG CGGGACGCGC TTCAAAGCGA GCTTCGCCGA TTATGACGCC TTTCATGACT GGTCGGTGAG TGAGCGCGGA CACTTCTGGA CCGCCGTATG GGAGCATTGC AAGGTCATAG GTGAGCCCGG GGAGAGGGCA CTCGTCGATG GCGAGCGAAT GCTCGACGCC CGTTTCTTCC CGGATGCGAG GCTCAACTTT GCCGAAAATC TGCTGCGCAA GACGGGCAGC GGTGCCGCCC TGATCTTCCG CGGCGAGGAC AAGGTGAGCT ATCAGTTGAG TTGGGCCGAA TTGCGCGCCC TGGTATCGCG CCTGCAACAG GCGCTGAAGG CGCAAGGGAT CGGCGTCGGG GATCGCGTTG CCGCGATGAT GCCGAATATG CCGGAAACAA TTGCCCTCAT GCTGGCGACC GCTTCCGTAG GCGCCATATG GTCGTCCTGC TCGCCCGATT TCGGCGAGCA GGGCGTTCTC GATCGCTTCG GCCAGATAGC GCCCAAGCTC TTCATCGCAT GCGACGGTTA TTGGTATAAC GGCAAGCGGC AGGATGTGGA CGCGAAGGTG CGCGCCGTGG CCAAGGCGCT CGGCGTCCCG ACCGTCATCG TTCCCTATGC CGGCGACAGT GCCGCACTCG CGCCTACCGT GGAGCGCGGG TTGACGCTTG CCGATTTCAT CGCCGATTTC GCCGCAGAAC CGCTCGAATT CGAGCGACTG CCATTCAATC AGCCGCTCTA TATTCTGTTC TCCTCCGGCA CCACCGGCGT GCCGAAATGC ATCGTCCATT CGGCCGGCGG AACGCTGCTG CAGCACCTTA AGGAGCACCG TTTCCACTGT GGCCTGAGGG AAGGGGAGCG GCTGTTCTAC TTCACCACCT GCGGCTGGAT GATGTGGAAC TGGCTGGCTT CGGGTCTGGC TGTGGGCGCA ACGCTCTGCC TCTATGACGG CTCGCCTTTC TACCCGGACG GCAACGTGCT CTTCGATTTT GCCGCCGCTG AGCGCTTCGC CGTGTTCGGA ACGTCGGCGA AATATATCGA TGCGGTGCGA AAGGGCGGCC TCACCCCGTC GAAGACGCAC GATTTGTCGC CCCTGCGGCT CATGACCTCC ACCGGCTCGC CGCTCTCGCC CGAAGGCTTT TCCTTCGTCT ACGAGGGCAT CAAGTCCGAT GTCCAGCTCG CGTCGATTTC CGGCGGGACC GACATCGTCT CCTGCTTCGT GCTCGGCAAT CCCATGAAGC CCGTATGGCG CGGAGAGATC CAGGGCTCCG GCCTTGGCCT CGCCGTCGAC GTCTGGAACG ACGAAGGCAG ACCCGTGCGC GGCGAAAAGG GCGAACTCGT CTGCACCAGG GCATTTCCGT CCATGCCCGT CATGTTCTGG AACGATCCCG ACGGAGCGAA ATATCGAGCC GCCTATTTCG ACCGCTTCGA CAATATCTGG TGCCATGGCG ATTTTGCCGA ATGGACCCCG CATGGCGGCA TCGTCATCCA TGGCCGCTCC GACGCAACAC TGAATCCCGG GGGCGTGCGC ATCGGCACGG CGGAGATCTA CAATCAGGTC GAGCAGATGG AAGAAGTGGC AGAGGCGCTC TGCATCGGCC AGGACTGGGA GGATGACGTC CGCGTCGTCC TTTTCGTGCG GCTGGCGCAA GGCGCCGAAC TCACAGAGCA ACTGTCCAGG GAAATCAAAA ACCGGATTCG ATCCGGCGCC TCGCCGCGGC ACGTACCGGC GAAGATCATC GCTGTCGCCG ACATCCCGCG CACCAAGTCC GGCAAGATCG TCGAACTGGC GGTCCGCGAC GTCGTGCACG GGCGCCCCGT GAAGAACAAG GAAGCGCTGG CGAACCCAGA GGCTCTCGAC CTCTTCGCCG GGCTGGAGGC GCTGAAGAGC TGA
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Protein sequence | MQADLPLWVP DREILEHSPM AEFIAWCGTR FKASFADYDA FHDWSVSERG HFWTAVWEHC KVIGEPGERA LVDGERMLDA RFFPDARLNF AENLLRKTGS GAALIFRGED KVSYQLSWAE LRALVSRLQQ ALKAQGIGVG DRVAAMMPNM PETIALMLAT ASVGAIWSSC SPDFGEQGVL DRFGQIAPKL FIACDGYWYN GKRQDVDAKV RAVAKALGVP TVIVPYAGDS AALAPTVERG LTLADFIADF AAEPLEFERL PFNQPLYILF SSGTTGVPKC IVHSAGGTLL QHLKEHRFHC GLREGERLFY FTTCGWMMWN WLASGLAVGA TLCLYDGSPF YPDGNVLFDF AAAERFAVFG TSAKYIDAVR KGGLTPSKTH DLSPLRLMTS TGSPLSPEGF SFVYEGIKSD VQLASISGGT DIVSCFVLGN PMKPVWRGEI QGSGLGLAVD VWNDEGRPVR GEKGELVCTR AFPSMPVMFW NDPDGAKYRA AYFDRFDNIW CHGDFAEWTP HGGIVIHGRS DATLNPGGVR IGTAEIYNQV EQMEEVAEAL CIGQDWEDDV RVVLFVRLAQ GAELTEQLSR EIKNRIRSGA SPRHVPAKII AVADIPRTKS GKIVELAVRD VVHGRPVKNK EALANPEALD LFAGLEALKS
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