Gene Smed_0198 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_0198 
Symbol 
ID5321028 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp225195 
End bp226382 
Gene Length1188 bp 
Protein Length395 aa 
Translation table11 
GC content62% 
IMG OID640789131 
Productpolysaccharide export protein 
Protein accessionYP_001325892 
Protein GI150395425 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1596] Periplasmic protein involved in polysaccharide export 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAAACGAG TGACTGCCCT TCTGCTCTGT ACCGCGCTTG CGGGATGCCA GGCCGTACCG 
GGCGAGGGCC CTTTGACAAC CGATATCGTG TCGGATGCCG GCCAGTCCGG ATCCGAGATC
GGCAGAAGGA ATGCCACGGT TTTTGATATC GTCGATGTCG ACGGGCAGTC GGCGCGGCTT
GTTTCCGAGT ATGTTTCCAC AACCCTCAGC CGCCGCTTCG GGATTGGCGG TGGCGTCGGC
CAAGTAGTCA TCGGCATCGG TGACCAGTTG AAGGTCACGA TCTTCGAGGC GGGCAGCGAC
GGCCTGTTTT CCACAACTGA ATCGAAGCAG ACGAGCATCG ACCTCGTCGT CCAGCCCGAT
GGCAAGGCCG CGATTCCCTA TGTTGGATCT GTCCGCTTTG CCGGTCTGAC GCTCGAGCAG
GCGCGGCAGG CGATCCTGGA GGCGCTGAAG CAGAAGGCGG TGGAACCGGA TGTGATCGTG
ACGTCGACAT CGACGGCATC GCGCAACGTG ACTGTCTCCG GCGCGGTCGG CCGCCCCTCG
GTCGTGCCGC TCAATCTCGT CAGCGAGACG ATCAATGAGG TGATCGCCAA GGCGGGCGGC
CCCTCGGCGC AGCCTTACGA GACCTACGTC ACCCTCGTGC GCGGCAAGAA GACCGGCACG
GTCCTGCTGA AGTCGATGAT TGAAAGCCCT TCGGAAAACA TTCACGTAAA GCCCGGCGAC
CAGATCTTCG TTACGCGCGA TCCGCGCACC TTCACGGTCC TCGGCCAGGT CCGGGCCAAT
CAGCGCGTCG AGTTCGGCGC CAACGACCTC AACCTGCTCG AAGCCGTGGC GCTCGGAGGC
GGCGGCTCGG ATCGCACGGT GGACGCCAAG GGCTACTTCG TCTTCCGGTT CGAGGAGCCG
GACATCGTCA TGAGCCTGCT TGGGCAGGAG CGTTTCCATC AGATGCTGAG CAAGGGCATG
AAAGCCGATC GCGTGGGGCG CTATCCCATC GTCTACCGGT TCGACATGAC CAACCCGGAC
AGTCTCATCG TCGGCCAGAC CTTCCCGATC AAGAATCGCG ACGTCATCTA CGCCTCGCGC
CATCCCTCGG TCGATATCAC GAAATTCCTC GACTTCGTCG CACGTCCGAT CGGTATCGTG
AATTCCGGCG TAAACATCGC CGACAATATC GACGACTTCA GAAACTGA
 
Protein sequence
MKRVTALLLC TALAGCQAVP GEGPLTTDIV SDAGQSGSEI GRRNATVFDI VDVDGQSARL 
VSEYVSTTLS RRFGIGGGVG QVVIGIGDQL KVTIFEAGSD GLFSTTESKQ TSIDLVVQPD
GKAAIPYVGS VRFAGLTLEQ ARQAILEALK QKAVEPDVIV TSTSTASRNV TVSGAVGRPS
VVPLNLVSET INEVIAKAGG PSAQPYETYV TLVRGKKTGT VLLKSMIESP SENIHVKPGD
QIFVTRDPRT FTVLGQVRAN QRVEFGANDL NLLEAVALGG GGSDRTVDAK GYFVFRFEEP
DIVMSLLGQE RFHQMLSKGM KADRVGRYPI VYRFDMTNPD SLIVGQTFPI KNRDVIYASR
HPSVDITKFL DFVARPIGIV NSGVNIADNI DDFRN