Gene Smal_1950 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmal_1950 
Symbol 
ID6476057 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameStenotrophomonas maltophilia R551-3 
KingdomBacteria 
Replicon accessionNC_011071 
Strand
Start bp2193737 
End bp2194270 
Gene Length534 bp 
Protein Length177 aa 
Translation table11 
GC content63% 
IMG OID642731132 
ProductLipocalin family protein 
Protein accessionYP_002028337 
Protein GI194365727 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3040] Bacterial lipocalin 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.100956 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.0832884 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCATTT TTCCGCTGCT TCCTCTGCTC GCAGTCGGCC TGTTCGGCGC AGGCTGCAGT 
TCCAGCGACA CCCGGCCCCT GCCGCGGCCA CCATCAGTGG ATGTGCCGCG ATTCATGGGC
GACTGGTATG TGATCGCACA CATTCCATCG CGCCCGGAAC GCGAGGCCTT CGATGCGGTG
GAAAGCTACG CGCTACGGCC GGATGGACGC ATCCAGACCA CCTTCACCTA TCGCAAGGGC
AGCTTCGATG CCCCACAGAA GTCGATGCAT CCGATCGGCC GGGTGGAGAA AGAAGGAAAC
GGTGCGATCT GGGGCATGCA GTTCATCTGG CCGATCCAGG CCGAATACAT CATCGCCTGG
CTCGATGATG GCTACCGCCA GACCATTGTG GCCCGCAGCA AGCGCGACTA CGTCTGGTAC
ATGGCGCGTA CGCCCCAGGT CTCGGAAAGC GACTACCAGC AGGCGGTGCA GCGCATTGCA
GCGATGGGTT ACGACACTGC CAGGTTGAGG CGGGTGCCGC AGTCGGTCCG CTGA
 
Protein sequence
MRIFPLLPLL AVGLFGAGCS SSDTRPLPRP PSVDVPRFMG DWYVIAHIPS RPEREAFDAV 
ESYALRPDGR IQTTFTYRKG SFDAPQKSMH PIGRVEKEGN GAIWGMQFIW PIQAEYIIAW
LDDGYRQTIV ARSKRDYVWY MARTPQVSES DYQQAVQRIA AMGYDTARLR RVPQSVR