| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smal_1623 |
|---|
| Symbol | |
|---|
| ID | 6475493 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Stenotrophomonas maltophilia R551-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011071 |
|---|
| Strand | + |
|---|
| Start bp | 1826671 |
|---|
| End bp | 1827549 |
|---|
| Gene Length | 879 bp |
|---|
| Protein Length | 292 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 642730805 |
|---|
| Product | pseudouridine synthase |
|---|
| Protein accession | YP_002028011 |
|---|
| Protein GI | 194365401 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
|---|
| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.449518 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.260522 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCCTGC CCAGCCGCCT GCAGCTTCCG CCCGGCCACT GGGCCACCCT GCTCGACGGC
CTGTGCGCGC GTTTTCCGCG CATCGATCGT GAGCAATGGC AGGATCGCTT CACGCGCGGC
CGGGTGCAGG ACGCGCAGGG CAGGGCGCTG GCAGCGGACA TGCCCTGGCA GGTGGGGCTG
GAGATCCAGT ATTTCCGGGA GGTGGTGGAC GAGCCGGTGA TCCCCTTCGC CGAGACTATC
GTCCATCTCG ATGCGCACCT GCTGGTGGCC GACAAGCCGC ACTTCCTGCC GGTCACGCCA
GCGGGAGGTT ATGTGCGCGA GACGTTGCTG GCACGCCTGG TCGCGAGCAC CGGTAATACC
GATCTGGTGC CGCTGCATCG GCTGGACCGG CTGACTGCAG GCCTGGTGCT GTTCTCCACG
CAGGCTGCAT CGCGCGACGC CTACCAGCGG CTGTTCCGCG AACGCCGCAT CGACAAGACC
TACGAGGCGC TGGCGCCGGC ACTGCCCGCG GTGACGTTCC CGCTGCATCG GCACAGCCGC
CTGGCTCCGG CCGAACCGTT CTTCCGCATG GCCGAAGTGC CCGGGGAGCC CAATGCGCGC
AGCCGGATCG AGCTGATCGA GGGTGAGGGA CCGATCTGGC GCTATCGGCT GCTGCCGGAA
ACCGGCCGCA AGCACCAGCT GCGCGTGCAC ATGGCGATGC TGGGCGCGCC GATCGAGGGC
GATGACCTGT ATCCGCAGTT GCGTCAGCGG CCGGCCGGCA CGGCCGAGGT GCCGCTGCAG
CTGCTGGCGC AGGGGCTGGC CTTCGACGAC CCGTTGAGCG GCGAGCGTCG GGTGTTCAGC
AGCCAGCGCT GCCTGCGCCT GCCGGATCAG GAAGGCTAG
|
|---|
| Protein sequence | MILPSRLQLP PGHWATLLDG LCARFPRIDR EQWQDRFTRG RVQDAQGRAL AADMPWQVGL
EIQYFREVVD EPVIPFAETI VHLDAHLLVA DKPHFLPVTP AGGYVRETLL ARLVASTGNT
DLVPLHRLDR LTAGLVLFST QAASRDAYQR LFRERRIDKT YEALAPALPA VTFPLHRHSR
LAPAEPFFRM AEVPGEPNAR SRIELIEGEG PIWRYRLLPE TGRKHQLRVH MAMLGAPIEG
DDLYPQLRQR PAGTAEVPLQ LLAQGLAFDD PLSGERRVFS SQRCLRLPDQ EG
|
|---|
| |