| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smal_0802 |
|---|
| Symbol | |
|---|
| ID | 6477987 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Stenotrophomonas maltophilia R551-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011071 |
|---|
| Strand | + |
|---|
| Start bp | 925876 |
|---|
| End bp | 926682 |
|---|
| Gene Length | 807 bp |
|---|
| Protein Length | 268 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 642729952 |
|---|
| Product | pseudouridine synthase |
|---|
| Protein accession | YP_002027190 |
|---|
| Protein GI | 194364580 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
|---|
| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.0903267 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.0729553 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGCGCACGC GCCGCCCACC TGCCGCCCCC GCCGCCCGCT CCCACGCCCC GCGTGGGCGT
GCGAACCCGA ACGCCTCCAG TGGTGTGCGC CATGGCCTGG CGCGCGTGCT GTCCAAGGCC
GGCGTGTGCT CGCGCAGCGA GGCCGCGCGC TGGATCGCCG AAGGGCGCGT ACGCGTCTCT
GGTCGCATCG TCCGTGATCC TGAATTTCCA ATTGCCAGCC CGGCACCGCC GATCGAGGTC
GACGGCCAGC CGATGGCTGC GCCGCAGCGC CTGTACCTGA TGCTCAACAA ACCGCGCGGG
GTGGTCACTA CTGCTCAGGA CGAGCGTGGA CGTGACACGG TTTACCGTTG TTTCGATGGT
GCCGGCCTGC CGTGGATCGC ACCGGTCGGG CGCCTGGACA AGGCCAGTGA AGGCCTGCTG
TTGTTCAGCA ATGATCCGCA GTGGGCCGCG CATCTGACCG ATCCGGAGAC CGGGCCGCAG
AAGACCTATC ACGTGCAGGT GGACCGCCTG CCCGACGAGG ACACCCTGGC CGCGCTGCGC
GCCGGTGTCG AAGACGAGGG CGAATTCCTG GTCGCCCTGG CCGTGCGCGT GCTGCGCAGC
GGCGACAAGA CCGCGTGGCT GGAGGTGGTC CTCGACGAGG GTCGCAACCG CCATATCCGT
CGCCTGTTGG CGGCCTTCGA CCTGCAGGTG CTGCGCCTGG TCCGGGTTGC GATCGGCGAG
CTCACGCTCG GCGATCTCGG CAAGGGCCAG TGGCGGGTGC TTGAGGTCAG CGACCAGCAG
CGGCTGGGGG CCGCTGCAAC AGGCTGA
|
|---|
| Protein sequence | MRTRRPPAAP AARSHAPRGR ANPNASSGVR HGLARVLSKA GVCSRSEAAR WIAEGRVRVS
GRIVRDPEFP IASPAPPIEV DGQPMAAPQR LYLMLNKPRG VVTTAQDERG RDTVYRCFDG
AGLPWIAPVG RLDKASEGLL LFSNDPQWAA HLTDPETGPQ KTYHVQVDRL PDEDTLAALR
AGVEDEGEFL VALAVRVLRS GDKTAWLEVV LDEGRNRHIR RLLAAFDLQV LRLVRVAIGE
LTLGDLGKGQ WRVLEVSDQQ RLGAAATG
|
|---|
| |