| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smal_0429 |
|---|
| Symbol | |
|---|
| ID | 6478381 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Stenotrophomonas maltophilia R551-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011071 |
|---|
| Strand | + |
|---|
| Start bp | 511001 |
|---|
| End bp | 514063 |
|---|
| Gene Length | 3063 bp |
|---|
| Protein Length | 1020 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 642729574 |
|---|
| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
|---|
| Protein accession | YP_002026817 |
|---|
| Protein GI | 194364207 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2200] FOG: EAL domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.176379 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.106324 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGGGGCG GTGCCAGGCG TCAAGAATGG CGTCCGCCGG CCGTTGAGGT CGGGGACGTG
GAGGATTCGT TCGCGCATGA AGCCAGCCGA CTGCACAAGG AAGACCGACC GATGCCCGCG
CTGAAGCGGG CGTTGGCTCG GCCGTTGCGC GCCATTACCT GGGGCGGCGT GCTGCTGGGC
GTGTTGCTGG TGGCTGGCTT GACCACCATG CTGGCCAACG ACCACCACCG CCGGCTGGAG
GCTGCGCAGC GCCAGAGCCG CGCGCTGGCG GTGGGCAGCG AGCGCCTGCT GGCGCTGGAA
CTGCGCAACC TGGAACGGGC GATGTCCGGT ATCGCCGCCG ACGCGGCCGA ACTGTTCCGC
CGCGTGCCGG TACAGGCGCC GGCACTGCTG GATGCCGCCA TCGGCGGCGT GCTGAGCCGC
CATGCCGAGC TGCACAGCAT CGTGGTGCTG GACCGCCACG GCCGCGCGAT CACCGCCGGC
AAAGGCGATC TGAACCTGCC GCTGTGGACC GACCCGCAGC GGCGCGGGCA GGGCAGCGCG
CTGTACATCG GTCCGCCGCA GCAGGCCGGC GACGATGGAT GGGTGGTGCC GCTGGCGCTG
TCGATGGCCG ACGATCGCTG GCTGCTGGCG CGGCTGCGCT GCGGCGAACT GCAGCGCATC
ATCGGCGGGC TGGATGTGGG CCCGAACGGA CTGGTCTCGA TCAGCGATGC CGAGGGTTAC
ATGCTGGCGC GGGTGCCGGA TCCGCATGGC ACGGTCGGCC GTCGCTTCGA CCTGCCTCGG
CGTGACCTGC TCGGCAAGCA GGCGGTGGTC GAGCTGGGCA GCGTGCCGGG CGCGGTCGAT
GGCGTGCCAC GGATCATCAC CGTCAGCACG CTCGAGCGCA GCCCGCTGGC GGTGCAGGTC
GGGTTGGCCG ATGAGGACGT GCTGGCGCCC TGGTGGCCGT ACCTGCAGGC GTCAGTGGCG
ATCGTGCTGG CTTACATCGG GGTGCTGCTG GTACTGCTGT ACGCGGTGCG CCGCAGCACC
CGCCGCCAGC AGTCGATGGC GGAGGAACTG AAGACCGGCC ACGCCGAACT GCGGCTGGCG
CACCAGGTGG GCCGTGTCTG CACCTGGTAT GTGGACGAGG ATGCGGCACT GCTGCGCTGG
TCGCCGCTGG CCCGAGAGAT TTTCGGGGTG CAGACCGATG CGCTGCCGGT GGCTGATTTC
TTTGCGCGCG TGCACCGTGA TGACGCCGCG CGCCTGCAGC ACGCCTTCGA CCAGGCGTTT
GCCGGTAGTG CGGTGCTCGA CCAGGTGTTC CGGCTGGTGC TGCCCGGTGG CGAGGTGCGC
TGGGTCGGTG CGCGTGGCCA GCGGGTGGAG GTGGCTGACA GTGAGCGGCG CATGATCGGT
GCACTGACCG ACCTGAGCGA GCGCTACCAG GCGCGTGAGC AGATGGGCGA AGCGGAGCGT
CGCTTCCGCC TGCTGTTCGA CCGCAACCCG GCGCCGTTCT GGGTGTTCGA TCCAGACACG
CTGCGCTTCA TCGAGGTCAA CGACGCCGCT GTGCGCCAGT ATGGCTACAG CCGCGAGGAA
TTCCTGGCGA TGAGCATCCT CGACATCCGC CCGCGCGAAG GCTGGGACGA GGTGAAGGGC
GCGATCGCCA AGGCCCGCGT CGGCGAGCTG CAGGACGCCA CCGTGCGCCT GCACCGGCGC
AAGGATGGCA GCGTGTTCGA AGTACGCGCA CACCTGTCCC GGCTCGACTT CGATGGACAA
CCGGCGTGCC TGGTGCTGGC CGAGGATGTC AGTGAACGGC TGGCTTACGA GCGCGACCTG
GCCTACCAGG CGCGGCACAA CCCGGCCACC GGCCTGCTCA ACGTGCGCGC GCTGACCGAA
CAGCTGGACG AGCACGATGC CGGCTACACC ATTGCGTTCG TGCAGCTGCG CGGCCTGCAG
CTGGTGGCCG ATACGCTGGG ACGCGAGATC GGCGATGCGG TGCTGCAGTC GATGGCCACC
CGGCTGGGCG GGCTGGGCGC ACGCTGCGGC ACGCTGGCCT TCCAGCCGGC AGAGGATTTC
GTGTTCGCCA TCGGCGCCGG GCAGGATGTC CAGCGCGTGC TGGACGACCT GTTGCAGATC
GTGTCGGCGC CGATGCGCGG CAAGGATTCG CTGCACCAGT TCGAGCCGCG TATCGGCGTG
GCAACGCACG TGGCCGGTGA CGGGCACAGC GCTGAGCAGG TGATCGGCAT GGCGGCACAG
GCCGCGCATG CAGCGCGCGC CGAGGGCAAT GTGGTGGTCT GGTTCGACGC GTCGGTGACC
ACGCGGCTGG CCGACCGCCT GCGCCTGGCC GGGCGCATCC ATGCCGCCAT CGACAACGAG
TTCCAGCTGT ACTTCCAGCC GATCCGGCAC GCCGGCGATG GCAGCCCGGC AGCGCTGGAG
GCGCTGCTGC GCTGGCCGCA GGCGGACGGT AGTTTCATTC CGCCCAACGA GTTCATCCCG
TTGTGCGAAG ACACCGGACT GATCCTGGCG CTGGGGCGCT GGGTGATCCG CGCGGCGGCG
AAGGCGCAGC GGCGGCTGGT CGATGCCGGT TGGGGCGAGC TTCCGATCGC GGTCAACGTG
TCGGCGGTGC AGTTCTTCAA CAGTGACCTG GTAACCGAGT TCACGCGCGC GCAGCAGGAC
TTCGGCCTGG CCCGCGGCGC GCTGCACGTG GAGCTGACCG AGAGCAGCCT GATGCGCAAG
CCGGCGCAGG CGATGCAGAC CATGCAGCGC CTGCACGAGC AGGGCATCAG CGTGTCGCTG
GATGATTTCG GTACCGGCTA CTCGAGCATG TCCTACCTGC AGCACCTGCC GCTGGACATC
CTGAAGATCG ACCGCAGCTT CGTTGCCGAC GTGGAAACCA ACCCACGCAA TGCCTCGATC
TGCCGCGCGC TGCTGTCGCT GGGCCACAGC ATGGGGCTGA CCATCATCGC CGAGGGCGTG
GAAACGCCGG GGCAGCTGGA CTGGCTGGCC GCGCACGGCT GTGACCAGGT ACAGGGCTAT
CTGCTGGGCC GGCCGGCGCC GCTGGAGCAG ATCATCGACG CGCTGGATGA GGTTCCGGCC
TAG
|
|---|
| Protein sequence | MRGGARRQEW RPPAVEVGDV EDSFAHEASR LHKEDRPMPA LKRALARPLR AITWGGVLLG
VLLVAGLTTM LANDHHRRLE AAQRQSRALA VGSERLLALE LRNLERAMSG IAADAAELFR
RVPVQAPALL DAAIGGVLSR HAELHSIVVL DRHGRAITAG KGDLNLPLWT DPQRRGQGSA
LYIGPPQQAG DDGWVVPLAL SMADDRWLLA RLRCGELQRI IGGLDVGPNG LVSISDAEGY
MLARVPDPHG TVGRRFDLPR RDLLGKQAVV ELGSVPGAVD GVPRIITVST LERSPLAVQV
GLADEDVLAP WWPYLQASVA IVLAYIGVLL VLLYAVRRST RRQQSMAEEL KTGHAELRLA
HQVGRVCTWY VDEDAALLRW SPLAREIFGV QTDALPVADF FARVHRDDAA RLQHAFDQAF
AGSAVLDQVF RLVLPGGEVR WVGARGQRVE VADSERRMIG ALTDLSERYQ AREQMGEAER
RFRLLFDRNP APFWVFDPDT LRFIEVNDAA VRQYGYSREE FLAMSILDIR PREGWDEVKG
AIAKARVGEL QDATVRLHRR KDGSVFEVRA HLSRLDFDGQ PACLVLAEDV SERLAYERDL
AYQARHNPAT GLLNVRALTE QLDEHDAGYT IAFVQLRGLQ LVADTLGREI GDAVLQSMAT
RLGGLGARCG TLAFQPAEDF VFAIGAGQDV QRVLDDLLQI VSAPMRGKDS LHQFEPRIGV
ATHVAGDGHS AEQVIGMAAQ AAHAARAEGN VVVWFDASVT TRLADRLRLA GRIHAAIDNE
FQLYFQPIRH AGDGSPAALE ALLRWPQADG SFIPPNEFIP LCEDTGLILA LGRWVIRAAA
KAQRRLVDAG WGELPIAVNV SAVQFFNSDL VTEFTRAQQD FGLARGALHV ELTESSLMRK
PAQAMQTMQR LHEQGISVSL DDFGTGYSSM SYLQHLPLDI LKIDRSFVAD VETNPRNASI
CRALLSLGHS MGLTIIAEGV ETPGQLDWLA AHGCDQVQGY LLGRPAPLEQ IIDALDEVPA
|
|---|
| |