| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_6018 |
|---|
| Symbol | |
|---|
| ID | 8729799 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Spirosoma linguale DSM 74 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013730 |
|---|
| Strand | + |
|---|
| Start bp | 7298499 |
|---|
| End bp | 7300787 |
|---|
| Gene Length | 2289 bp |
|---|
| Protein Length | 762 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | |
|---|
| Product | CRISPR-associated helicase Cas3 |
|---|
| Protein accession | YP_003390779 |
|---|
| Protein GI | 284040849 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0478884 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTATGC TGGATCATTT ATTAGCGAAA ACAGAAAATC GAGAATCGCT GGGAAAGCAT
ACCGACTTGG TGTTGAAAGC ATGGCTCCAA TTACGTGATC GTTATGCGAC TGTGTTAGGA
GAAGACGAGC AATTTTGGTT CGATAGCTTC ATTGCTGCCT TATTCCATGA TTTCGGAAAA
GCATCCGTCA ACTTTCAGAA TATGCTGTTA GCTATTCTGA AAGAGCCTAT TGCTGAAAAA
GGATATGACC CTATGCGACA CGAATTTCTT TCGGGGTTGT TGCTGGCGGC TCATACAATA
CTGGTAACGC GTAGTCGTAA AGATTTGTCG GCAAATCCAG CTCAATTATT TGCTGTTTTT
ACGCATCATA AAGATTTTAC ACCTGATCTT TTTTGTCAAG ATGCTATCAA GCAATGGAAG
ATCAAACCGA ATGATGCAGG TGCATTTTTT GCTTATGCCC GTCAGCGTAT ACAAGAACAC
TATCCTGACA AAGGAGACTT TCTAAACGGA ATAGAAGCAG CCTGGGAGTT CATGGCTAAT
AAGCCAGCCA GTTTATTATT GAGCGTTAAA GACAGAGCTA TTACTGAGCC AACATTAGCC
CGTTTAAAAG AACAACGAGA GTATAGCTAT CGCAAAACCT ATTTACTACA TAAAGCCTTA
CTCGTTATTG CCGACTGGAC GGCTTCGGGT CATCGAAACC TTGAAGAACC ACTGCGTTAC
GATGAAGAGT TGATTCGCCG AAAAGTAGCT GAACGGGTGC AGAAAGCAGG AGGTACGTTT
ACGGGCTTTA GAGAGTTTCA GGATAAAAGC GGTCAGATAG CTGGCAATGT CTTGGCCATT
GCACCCACTG GAAGCGGTAA AACGGAAGCA TCTTTGTTAT GGGCCAGCCA GCGGGAAGGT
TTTGAGAAAA TAGTCTATCT ACTGCCAACT CGTGTTACAG CTAATTCGCT TTATCTACGT
TTAGGGGAGT ATTTTGGTAA AGCGTCTGAT GGAGTCGATG ACTACACGGC CGTTGTCCAT
TCATCGGCCA AACTGTTTCG ACTGGAATTA GACGAAACAT ACAGCAATTT CAACTATCTG
CGTGAAGCTG CGTTTTTTAA GGCTGTAACT GTCGCGACAG TTGACCAGAT GCTTACGCAG
GGTTTTAATC TTGGCTGGTG GGAAATGAAG ACGTTTCACC TGTTCAGAGC CAAGGTTATT
ATTGACGAAG TTCATGCGTA TGCGCCCTAT ACATTAGGGC TAATAGTTGC ATCAATTCGC
TACTTACGAC AAAACTTCCA AACGCAGTTC TACATCATGA CGGCTACCAT GCCGCAGAAG
TTACAAGCTC TATTAACACG TGAGTTAGGA AATGACGTAA CGGTACTACG CGATCAGGAA
TTGCTGGATA AAAAGCGAAA TGTTTTTCAT GTCGAAGATA GAACCATCGA CCAATTACGT
CCCGACATTG AACAGGATTT GAAAGCAGGG AAGAAAGTAT TAGTTGTTGT TAATACTGTC
GATGAGGCTA TTCGGTTGTA CGACCAATAT GCTGACTATA AGCCGATTTG TTATCACTCC
CGTTTTATCG TCAAGCACCG TACCGAAAAG GAACAAGCGA TCCTGAACAA CGAAAAGGAG
AAACCTAAAG AAGGATTTTT GTTGATTGCT ACCCAAGTCG TAGAAGTCTC GCTTGATATT
GATTACCAGT CACTTTATAC CGAGAATGCG CCCATAGATG CTATTATTCA ACGAGCTGGA
CGAATCAACC GCAAACGTAG AGATGAGCCG GGTAAAGTTG TGGTTTTTCC ACATTCAGAG
GTGGCAGAAA AGCATGTGTA CGATTATCCA GCAGGTATAT TGAATACAAC CCTTGACGTA
TTGAAACAAC ATCAGGGCGT AGCTGTGTCA GAGCAGGATT TACTTAATAT GGTGGAAGAA
GTGTACAAAG ACTGGAATGT TGAGAACGAG GAGTTATACA AAGATGAACT ATCTAAATAT
GAGCGTTTAG TACGAGATAA ATGCAGTTAT CTATACGATT TCAGCGAAGA CATGGAACAG
GTATTTACTC GTGAAGGGCT TGATACCGTT AGTATCATTC CAGATTGTTT TAAGCCTGAA
TTAGTATCCG CAAGTGTCTT AGAAAAAAGT AAGCACGAAG TAGCAATACG AAACCATCGC
TTTAAATCTG GTAAACATAC TAGCGATAAA GATCATAGCT GGTTTAAGTA CTTCGATTGT
GATTATGATT TTGAGCGCGG GTTACGATTC AAGAAAAAAG CTGACATACC TCATACTTAC
AATCACTAA
|
|---|
| Protein sequence | MAMLDHLLAK TENRESLGKH TDLVLKAWLQ LRDRYATVLG EDEQFWFDSF IAALFHDFGK
ASVNFQNMLL AILKEPIAEK GYDPMRHEFL SGLLLAAHTI LVTRSRKDLS ANPAQLFAVF
THHKDFTPDL FCQDAIKQWK IKPNDAGAFF AYARQRIQEH YPDKGDFLNG IEAAWEFMAN
KPASLLLSVK DRAITEPTLA RLKEQREYSY RKTYLLHKAL LVIADWTASG HRNLEEPLRY
DEELIRRKVA ERVQKAGGTF TGFREFQDKS GQIAGNVLAI APTGSGKTEA SLLWASQREG
FEKIVYLLPT RVTANSLYLR LGEYFGKASD GVDDYTAVVH SSAKLFRLEL DETYSNFNYL
REAAFFKAVT VATVDQMLTQ GFNLGWWEMK TFHLFRAKVI IDEVHAYAPY TLGLIVASIR
YLRQNFQTQF YIMTATMPQK LQALLTRELG NDVTVLRDQE LLDKKRNVFH VEDRTIDQLR
PDIEQDLKAG KKVLVVVNTV DEAIRLYDQY ADYKPICYHS RFIVKHRTEK EQAILNNEKE
KPKEGFLLIA TQVVEVSLDI DYQSLYTENA PIDAIIQRAG RINRKRRDEP GKVVVFPHSE
VAEKHVYDYP AGILNTTLDV LKQHQGVAVS EQDLLNMVEE VYKDWNVENE ELYKDELSKY
ERLVRDKCSY LYDFSEDMEQ VFTREGLDTV SIIPDCFKPE LVSASVLEKS KHEVAIRNHR
FKSGKHTSDK DHSWFKYFDC DYDFERGLRF KKKADIPHTY NH
|
|---|
| |