| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_5924 |
|---|
| Symbol | |
|---|
| ID | 8729705 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Spirosoma linguale DSM 74 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013730 |
|---|
| Strand | - |
|---|
| Start bp | 7178813 |
|---|
| End bp | 7180315 |
|---|
| Gene Length | 1503 bp |
|---|
| Protein Length | 500 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | |
|---|
| Product | GH3 auxin-responsive promoter |
|---|
| Protein accession | YP_003390685 |
|---|
| Protein GI | 284040755 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 50 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGAATCC GTTCAATCCT GAGTAAGCCA TTAGCCAAAT TTGTCGTAGA GCGGCAACGT
GCCTGGATGT ATCAACCGGC TGAAGCTCAG CAGCGCTGTT TTCAGCAATT GATGGCCGGT
GGCCGTGAAA CCGTTTTTGG CAAAGATCAT CGATTAAAGG ACGTAAACAC GGTTCAGGAG
TTTCGGCAGG CGGTCCCGGT TCGGGATTAT GAAGACCTGA AACCATATAT TGAACAGATT
TTATCTGGCG GTACGGATGT ACTTTGGCAA GGGAAGCCCC TGTATTTCGC CAAAACATCC
GGCACCACAT CCGGTACTAA ATACATTCCA ATTACCCGCG ACTCGATCCC CAATCATATC
AATTCGGCCC GCGACGCGCT GTTGAATTAC ATTAATGAAA CGGGAAACAG TGCGTTTCTG
GATAAAAAAT TAATTTTTTT ATCGGGCAGT CCCGAACTGA CCCAGAAAGC AGGCATAAAC
ATCGGACGGC TTTCGGGTAT TGCCAACCAC CACGTACCGG CCTACCTCCG CACCAATCAG
TTACCCAGCT ACGAAACAAA CGTCATTGAG GATTGGGAAA CCAAACTCGA ACGCATCATT
GACGAGACCA TCACCCAGCC CATGTCGCTG ATTTCCGGGA TTCCGCCCTG GGTGCAGATG
TATTTCGACC GGATTCAGCA ACGAACCGGC AAGTTGATCA AAGATGTTTT TCCGGATTTT
TCGGTATTTG TCTATGGTGG CGTCAACTTC GAGCCGTACC GCGCCAAGTT GTTCGAAAGC
ATTGGCAAGC GTATCGACTC CATCGAGACG TACCCGGCTT CTGAAGGGTT CATTGCCTTT
CAGGATAGCC AGACCGAAGA AGGCCTATTG CTATTAGCCG ATAGCGGCAT CTTTTTTGAA
TTCATTGCCG CCGACGAATA CTTCACGGAG AACCCACGTC GGTTAACAAT TGAGGAAGTC
GAGTTAGGGA AAAACTATGC GGTGATCATC AACAACAACG CGGGTTTATG GGGCTACTCG
CTCGGCGATA CGGTCAAGTT TGTATCGCGG GAGCCGTACC GGTTGCTGGT AACAGGGCGC
ATCAAACACT TTATATCGGC TTTTGGCGAG CACGTTATTG GCGAGGAGGT AGAGAAGGCG
CTGAAGGACG CCATGCAGAA ACACCCGGAA ACGGAAGTTG TGGAATTTAC CGTTGCCCCA
ATGGTCAGTC CGAAAGAGGG TCTGCCTTAT CACGAGTGGC TTATTGAGTT TGCCACCCCG
CCCCACGACC CGACCGCCTT CGCCCGCGAT GTAGACAACC GCCTAACCGA ACTGAACGTA
TATTATGACG ATCTCATTAC GGGTTCTATC CTACAACCGC TCAAACTGAC CAGCCTCCCA
CGCGGGGCGT TTCAGCAATA CATGAAATCG CAGGGCAAGC TGGGTGGGCA GAACAAAGTC
CCGCGCCTGG CCAACGACCG GAAGCTTGCG GATGGATTAG CAGGGGTAAT GAAAAATGTG
TAA
|
|---|
| Protein sequence | MGIRSILSKP LAKFVVERQR AWMYQPAEAQ QRCFQQLMAG GRETVFGKDH RLKDVNTVQE
FRQAVPVRDY EDLKPYIEQI LSGGTDVLWQ GKPLYFAKTS GTTSGTKYIP ITRDSIPNHI
NSARDALLNY INETGNSAFL DKKLIFLSGS PELTQKAGIN IGRLSGIANH HVPAYLRTNQ
LPSYETNVIE DWETKLERII DETITQPMSL ISGIPPWVQM YFDRIQQRTG KLIKDVFPDF
SVFVYGGVNF EPYRAKLFES IGKRIDSIET YPASEGFIAF QDSQTEEGLL LLADSGIFFE
FIAADEYFTE NPRRLTIEEV ELGKNYAVII NNNAGLWGYS LGDTVKFVSR EPYRLLVTGR
IKHFISAFGE HVIGEEVEKA LKDAMQKHPE TEVVEFTVAP MVSPKEGLPY HEWLIEFATP
PHDPTAFARD VDNRLTELNV YYDDLITGSI LQPLKLTSLP RGAFQQYMKS QGKLGGQNKV
PRLANDRKLA DGLAGVMKNV
|
|---|
| |