Gene Slin_5514 details

Gene Information

• Locus tag: Slin_5514
• ID: 8729282
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Spirosoma linguale DSM 74
• Kingdom: Bacteria
• Replicon accession: NC_013730
• Strand: +
• Start bp: 6708826
• End bp: 6712206
• Gene Length: 3381 bp
• Protein Length: 1126 aa
• Translation table: 11
• GC content: 47%
• Product: transcription-repair coupling factor
• Protein accession: YP_003390279
• Protein GI: 284040349

Plasmid Coverage information

• Num covering plasmid clones: 22
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 37
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

GTGTGTGACT TACAACCTGA CTTTCGTTTG AAACCTGATG AATTACTCGG CCTTTACGCC 
GACGATAGTT TTATAAAACT GCTCGCTGAA CCATTTAGCC GAAAAGCATC GAGCGAGCCA 
AAACGATTGC AGATCAAGGG TTTGGTTGGA AGCCTGGACG CAGTAGTGGC CTCAACGATT 
TTTAAGTCGG TAGGAGGGAA TCACTTATAC ATACTGACGG ATCGTGATGA GGCTGCGTAC 
TTCTTCAACG ACCTGCAAAA CCTGCTAAGC CGTGAAGTCC TTCTGTTCCC GATGTCGTAC 
AAAAAGCCGT ATCAATACGA AGAAATTGAA AACGCCAATG TACTGATGCG GGCGGAGGTG 
CTGAACAAAC TCAACCCGGC ACCTAAAGAC GGCTTGCTGA TGGTAACGTA CCCCGAAGCG 
TTGTCTGAAA AGGTTATCAA CAAGCGGTCG TTGCAGGCAA ATACGCTAAC CATTCGGGTT 
GGAGAAAAGC TGGATACGCA CTTCGTTTCT GAATTACTCC AGACGTATGA GTTTGAGAAG 
ACCGATTTTG TGTACGAAGC GGGTCAGTTT TCTGTACGGG GGGGCATCAT TGACGTATTT 
TCGTTCGCCA GCGAGTTCCC GTTCCGAATC GATCTATTCG GTGATGAAGT TGAAAGCATT 
CGGAAATTCA ATCCAGAGTC GCAGTTGTCG ACAGATGCCG TCGACTTTAT TAACGTAATT 
CCCAATATTC AGACAAAACT GGTTCAGGAA ACTCGGGAAT CCTTTTTCGA CTTTTTGCCG 
GAAGCCACAA CGATCTGGGC AAAAGACGTT GAATTTACGC TTGAAATCAT CGAGAAAAAC 
TTCGAAAAGG CGGAGCAAAG CTTTGCTACC GTGCTGGAAA GTAGCGGAGG CATTCAAATC 
GTTTCCGACC CAAATGCCTT ATTTGAGACC CGGCGTACAT TTCTGAATGA ACTGAAGCGG 
TTTCAAACAG TAGAATTCGG CCGGAAATTT TACTTTAAAA CGGAAGGTCG TCAGCAGTAT 
AACTCCAAGC CGCAACCGTC GTTTAATAAG GACTTTAAAC GGCTGATCGA CACAATGGCT 
GATCTTCAGT CGAAGGGTTT TACCAACGTA ATTGCGGCCG AATCGTTTAA GCAACTGGAT 
CGATTACGAA CCATCTTTGA AGAACTGGAC CCGTTTGTAA AATTCCAGTC CATGAATGTA 
GGGCTTCGGG AAGGTTATAT AGACGATGCC CTCAAAATTG CCTGTTTTAC CGATCACCAG 
ATTTTCGACC GGTACTACAA ATACCGCGTT CAGGACAAGT TTTCGAAGTC AAAAGCCCTT 
ACACTTCGCG AGTTAAAAAC GCTTCAACCA GGTGACTACG TTACCCATGT TGACTACGGT 
ATTGGCCGGT TTGCGGGTCT TGAAAAAGTA GATCATGGCG GTAACGAACA GGAGGCTATT 
CGGCTTATTT ACCGCGACAA TGACATACTA CTCGTTAGTA TTCACAGCCT TCATAAAATA 
GCCAAATACA GCGGCCGGGA AGGTGGGCCG CCAACCATGA GTAAGCTTGG TTCGCAGGAG 
TGGGAACAGA AAAAGTCCCG TATTCGGAAG CAGGTAAAAG ACATTGCGCG TGAATTGATT 
GCCCTGTACG CAAAACGCCG AACAGCGCCC GGTTATGCCT ACAGCCGAGA TAGTTTTCTA 
CAAGCTGAGC TTGAGTCGTC GTTCCTTTAT GAGGACACAC CAGACCAGGC CAAGGCGACG 
AACGACGTCA AAGATGACAT GGAACGTCCG CACCCGATGG ATCGGCTAGT GTGTGGCGAC 
GTTGGCTTTG GCAAAACTGA AATTGCAATC CGGGCCGCGT TCAAAGCCGT TACGGATAAT 
AAGCAGGTAG CTGTTCTGGT TCCTACGACC ATCCTCGCCA TGCAGCATTT CAAGACGTTT 
TCGGAGCGAA TGGCCGACTT TCCAGTCAAG ATTGAATACA TCAATCGATT TAGAACGGCG 
GGTCAGATAA AAGAGATTTT AAAAGGAGTC AGTTCGGGCG AAATTGGTAT TCTAATCGGT 
ACCCACCGGA TTGTCAATAA AGACATCAAA TTCAAAGACC TGGGCCTTCT TGTCATTGAC 
GAAGAACAAA AATTTGGTGT AAAGACCAAA GATCGGTTGA AAGAAATGCG GGTAGAGGTA 
GACGTACTTA CACTTACGGC TACTCCAATT CCCCGTACAT TACACTTCTC GCTGATGGGT 
GCCCGGGATC TTTCGGTCAT TGCAACACCT CCGCCAAACC GCCAGCCCGT AACTACAGAA 
GTTCATGCAT TCAATGAAGC GATTATCCGG GATGCCGTAA GTTCGGAAGT CAGGCGGGGA 
GGTCAGGTGT TTTTCGTTCA TAACCGGGTC AATGATATTG AATCGATCGG CAACCTGATC 
ATGCGCCTGG TTCCTGAGGC CCGCATTGGC GTTGCACATG GTCAGATGGA TGGCGAGCGG 
CTGGAGCGAA TCATGACCCG ATTCATCGAA GGAGATTATG ATGTACTTAT CTCGACAAAT 
ATCATTGAAT CGGGGCTCGA TATTCCCAAT GCAAACACGA TTTTGATCAA TAATGCGCAT 
TACTTTGGTT TGTCTGACCT ACACCAGATG CGGGGTAGGG TAGGGCGCTC TAACCGAAAG 
GCATTTTGTT ACCTGCTTAC ACCACCGCCT TCTGTGCTCA CCGCAGATGC CCGAAAGCGG 
CTTCAGACCC TGGAAGATTT CTCGGATTTA GGCGAGGGTT TCAAAATTGC CATGCGCGAC 
CTGGACATTC GTGGGGCAGG AAATCTACTA GGCGCTGAAC AGAGTGGTTT TGTGAATGAC 
CTTGGGTTCG AAATGTACCA TAAAGTGCTT GACGAAGCGG TTCAGGAGCT GCGGGAAAAT 
GAGTTTAAAG ACTTGTTCGA AACAAAGCCG GGCGATTTGA AACTTTCCCT TCCCGATACG 
GTTATTGAGA CTGATTTACA GGTTGTTATT CCAGAGAAGT ACGTATCGAA TATTTCGGAG 
CGCTTAGCGT TATATACACG TTTGGACAGT CTTCAGAATG ACAATGAAGT ACAGGCATTT 
AGACAGGAAG TCATCGACCG GTTCGGACCG ATGCCTGAGG AGGTTGAAAA CCTGATTAAA 
ATGGTAAATG TTCGCTGGAA GGCCGAGCAA TTATACCTTG AAAAACTGAC GCTTAAGAAT 
AATATCATGA AAGGATACTT CGTTTCTAAC GGGAACGATG AGTTCTTTAA ATCGGACCAG 
TTTGGCAAGG TAATTGAGTA CATCAAGCGA AACCCAACCA AAAGTTCGTT GAAAGAGTCA 
AAGGGAAGGC CAATTATTAC GCATTCAGAC GTTTATTCCG TCGAGCAATT AGGCGAAATA 
ATGGGCGCAT TGACAAATTA A 

 

Protein sequence

MCDLQPDFRL KPDELLGLYA DDSFIKLLAE PFSRKASSEP KRLQIKGLVG SLDAVVASTI 
FKSVGGNHLY ILTDRDEAAY FFNDLQNLLS REVLLFPMSY KKPYQYEEIE NANVLMRAEV 
LNKLNPAPKD GLLMVTYPEA LSEKVINKRS LQANTLTIRV GEKLDTHFVS ELLQTYEFEK 
TDFVYEAGQF SVRGGIIDVF SFASEFPFRI DLFGDEVESI RKFNPESQLS TDAVDFINVI 
PNIQTKLVQE TRESFFDFLP EATTIWAKDV EFTLEIIEKN FEKAEQSFAT VLESSGGIQI 
VSDPNALFET RRTFLNELKR FQTVEFGRKF YFKTEGRQQY NSKPQPSFNK DFKRLIDTMA 
DLQSKGFTNV IAAESFKQLD RLRTIFEELD PFVKFQSMNV GLREGYIDDA LKIACFTDHQ 
IFDRYYKYRV QDKFSKSKAL TLRELKTLQP GDYVTHVDYG IGRFAGLEKV DHGGNEQEAI 
RLIYRDNDIL LVSIHSLHKI AKYSGREGGP PTMSKLGSQE WEQKKSRIRK QVKDIARELI 
ALYAKRRTAP GYAYSRDSFL QAELESSFLY EDTPDQAKAT NDVKDDMERP HPMDRLVCGD 
VGFGKTEIAI RAAFKAVTDN KQVAVLVPTT ILAMQHFKTF SERMADFPVK IEYINRFRTA 
GQIKEILKGV SSGEIGILIG THRIVNKDIK FKDLGLLVID EEQKFGVKTK DRLKEMRVEV 
DVLTLTATPI PRTLHFSLMG ARDLSVIATP PPNRQPVTTE VHAFNEAIIR DAVSSEVRRG 
GQVFFVHNRV NDIESIGNLI MRLVPEARIG VAHGQMDGER LERIMTRFIE GDYDVLISTN 
IIESGLDIPN ANTILINNAH YFGLSDLHQM RGRVGRSNRK AFCYLLTPPP SVLTADARKR 
LQTLEDFSDL GEGFKIAMRD LDIRGAGNLL GAEQSGFVND LGFEMYHKVL DEAVQELREN 
EFKDLFETKP GDLKLSLPDT VIETDLQVVI PEKYVSNISE RLALYTRLDS LQNDNEVQAF 
RQEVIDRFGP MPEEVENLIK MVNVRWKAEQ LYLEKLTLKN NIMKGYFVSN GNDEFFKSDQ 
FGKVIEYIKR NPTKSSLKES KGRPIITHSD VYSVEQLGEI MGALTN