| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_5287 |
|---|
| Symbol | |
|---|
| ID | 8729052 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Spirosoma linguale DSM 74 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013730 |
|---|
| Strand | + |
|---|
| Start bp | 6448953 |
|---|
| End bp | 6451754 |
|---|
| Gene Length | 2802 bp |
|---|
| Protein Length | 933 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_003390055 |
|---|
| Protein GI | 284040125 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.284266 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGAAACA CATACCTGTA TCGCTGGCTG ATTCTGGCCA GTATTTTTTC CTTGTTTATT
GCGCTTACAA CGTCTGCTCA AACCATTAGC GGACAGGTAA CGGATGCCAC CACAGGAACC
GGTCTGCCCG GTGTTTCCGT GCTGGTAACC GGCCAGACAG CCGGGGCCAT TACCGATGCA
AATGGACTTT ACAACCTGTC GGTTAGTCCG GGCTCGTACA CCCTCCGCTT TAGTTTTGTG
GGCTATACAA CCCAGAACAT ACCCGTTCAG GTTACGGCTG GCAACACCTC TACCGTAAGC
GTCAAACTCG TGGAAGGGCT GGCAAGCCTC AACGAAGTGG TGGTCGTGGG GTCGCGCTCG
ACCCAGGCCC GCACCAGCAC CGAAACGGTA GCGCCGGTCG ATGTGATTCA ATCGCGCGAT
TTACAGGCGA CGGGCCAAAT CGACCTGACC CAGCAACTGA ACTTTGTAGC CCCGTCGTTC
AACTCGTCGC GGCAAACGGT GTCGGATGGT ACGGATCACA TCGACCCGGC TACCCTGCGC
GGCCTTGGCC CCGATCAGGT ACTGGTGTTG CTCAACGGCA AGCGTCAGCA CAACCAGGCG
CTTATCAACA TCAACGGCAC CATCGGTCGC GGGTCGGTTG GGACGGATTT GAACGCCATT
CCGAGTTCGG CGATTGAGCG GATTGAAGTG CTGCGCGATG GGGCGTCCTC GCAATACGGC
TCCGATGCCA TTGCGGGCGT CATTAACCTC CGGCTGAAAG AGCGGCCCGG CACAACGGTG
AACGCACAGG TAGGCCAATA TTACAAAGGC GATGGCCAGG TGGCACAGAT TGGCATCAAC
CACGGCTTTA AACTCGGCGA AAAAGGCTTT CTGAGCCTTA CGGGCGAATT TCGCCACCGG
GGCGCTACCA ACCGCGCAGG CGATTACACC GGACCGGTTT ACACAAACTG GAACGTAGGC
CAGCAATCGG GCGAGAGTGC TGCGGCTTAC GTAGCGCGTC GGCAGAGCCT GTATCAGCAG
GACCAGACGT TGATTCAGCA GAATAATTTC AGCCTGAAGA ACAACCTTCA GGTGGGTAAT
GCCCGAGTCG ACAACGCCGG TTTCTTCCTG AACGCCCGCG TCCCGATTGC CAATAGCAAC
GCCAGTTTCT ACGCATCGGG CGGACTCAAC TACCGGCGTG GGCTGGCGGG TGGTTTCTAC
CGCTATCCTT ACCAGACCTC GCAGGTGATC ACGTCTATTT ACCCCAACGG ATTCCTGCCC
AATATCCAGT CGAGCATCAA TGACCAGTCG CTGCTGGTGG GCGTCAATGG CGAAACGAAG
GGCTGGCGCT GGGACATCAG CAACGTGTAT GGCGGCAACT CGTTCCGCTT CGACGTGACC
AACTCCAACA ACGCGTCGCT GGCGTATCTG GGCACGCGTA ATAACCCCAC TTCATTTTAT
GCTGGCACGC TGAGCTTCTA CCAGAACTCG GCCGACATTA GTGCCGCCAA GGATTTCGGG
AAGCAACTCG GGCTGACGTC GTTCAACGTA GCTACCGGCC TCACCTACCG CAACGACCAG
TACCGGATCA AACCCGGCGA AGCGGCTTCG TACCTGAACT TCAGCCCCAC ATCGGGTCAG
ATTGGCGGCT CGCAGGTGTT TCCGGGCTAC CAGCCTGCCA ACGCGGTCAA CGCCACCCGC
AATGTATACG GTGGCTACAT CGACCTGGAG TCGGATGTGA CGACCCGTCT GCTGCTCAAC
GCAGCGGGTC GCTACGAGTA TTACAGCGAT TTTGGCGGAA ATCTGGCGGG AAAAATAGCC
GCCCGTTACC GGTTCAGCGA AGCGTTTTCG CTACGGGGTT CCATAAGCAA CGGTTTCCGG
GCACCTTCGC TGCACCAGCG CTATTTTAGC GCCATCAGCA CGGTCTTTGT CTCGAATGGC
ACGATTCTGG AGCCCCGCCA GACGGGTACG TTCCGCAATG ACAGTCCCAT TGCGCAGGCC
TTTGGTGTGC CGCCACTGGG TGCCGAACGC TCCACCAATT ACAGCATCGG TATCACCTCG
CGGCCATTGC CGAACGTGAG CGTTACGGTC GATGCGTACC AGATCAACAT CACCAACCGG
ATTATTTACA GCAACCAGTT TTCGCGCAGT ACATCGGGGG CGGGTTTGAT TGTGGCCAAT
ATCCTGAACG GGGCCGGGCA AACGGACGTG AACAGCGCCC AGTTTTTTGC CAATGCGGTG
AATACCCAAA CGCAGGGAAT CGACGTGGTC ATTGCGACCA ACCCCCGGCT CAGAACGGGT
ACGCTGGACA TCACGCTGGC GGCCAACTTC AACCAGACGA AACTCGTGGG CGATATTCAA
CGGCCTGCTA ACATACCAAC GGATGCCACC TTCGGTAATT TCCTGTTCAA CCGGCAGGAC
AGCGCCCGGC TAACGGTGGC CCAGCCCAAG AGCAAAATAC AGCTCACGTT CAATTACCGG
CTGCGCAAGT TTGGGGCTGT GCTCCGTTTC TCGCGCTTCG GCACGGTACA GGCCTACGAC
CCCGCCAACC CCGCGCTGGA TGAAATGCAG AATCCTAAAC TCATCACCGA CCTGAGTTTA
TCGTACCGCA TCCTGAAGAA CCTCAACATG ACCGTGGGGG CCAATAACCT GTTCGATATT
TACCCCGACC GGCTCCGCGT GACCAATTAT CCAACGGCGG AGCGATACGG ATCGGCGGCA
CTGGACAATT CATCTTTCGG GCGGTTCGTC TATAGCCGAA GCGCCACGCA ATTTGGGTTT
AACGGCGGGT ATTACTTCGT AAACCTGTCA GCAAATTTTT AG
|
|---|
| Protein sequence | MRNTYLYRWL ILASIFSLFI ALTTSAQTIS GQVTDATTGT GLPGVSVLVT GQTAGAITDA
NGLYNLSVSP GSYTLRFSFV GYTTQNIPVQ VTAGNTSTVS VKLVEGLASL NEVVVVGSRS
TQARTSTETV APVDVIQSRD LQATGQIDLT QQLNFVAPSF NSSRQTVSDG TDHIDPATLR
GLGPDQVLVL LNGKRQHNQA LININGTIGR GSVGTDLNAI PSSAIERIEV LRDGASSQYG
SDAIAGVINL RLKERPGTTV NAQVGQYYKG DGQVAQIGIN HGFKLGEKGF LSLTGEFRHR
GATNRAGDYT GPVYTNWNVG QQSGESAAAY VARRQSLYQQ DQTLIQQNNF SLKNNLQVGN
ARVDNAGFFL NARVPIANSN ASFYASGGLN YRRGLAGGFY RYPYQTSQVI TSIYPNGFLP
NIQSSINDQS LLVGVNGETK GWRWDISNVY GGNSFRFDVT NSNNASLAYL GTRNNPTSFY
AGTLSFYQNS ADISAAKDFG KQLGLTSFNV ATGLTYRNDQ YRIKPGEAAS YLNFSPTSGQ
IGGSQVFPGY QPANAVNATR NVYGGYIDLE SDVTTRLLLN AAGRYEYYSD FGGNLAGKIA
ARYRFSEAFS LRGSISNGFR APSLHQRYFS AISTVFVSNG TILEPRQTGT FRNDSPIAQA
FGVPPLGAER STNYSIGITS RPLPNVSVTV DAYQINITNR IIYSNQFSRS TSGAGLIVAN
ILNGAGQTDV NSAQFFANAV NTQTQGIDVV IATNPRLRTG TLDITLAANF NQTKLVGDIQ
RPANIPTDAT FGNFLFNRQD SARLTVAQPK SKIQLTFNYR LRKFGAVLRF SRFGTVQAYD
PANPALDEMQ NPKLITDLSL SYRILKNLNM TVGANNLFDI YPDRLRVTNY PTAERYGSAA
LDNSSFGRFV YSRSATQFGF NGGYYFVNLS ANF
|
|---|
| |